python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-0-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-0-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-0-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-0-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-0-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-0-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-0-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-0-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-0-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-0-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-0-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-0-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-0-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-0-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-0-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-0-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-0-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-0-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-0-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-0-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-0-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-0-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-0-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-0-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-0-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-0-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-0-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-0-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-0-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-0-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-0-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-0-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-0-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-0-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-0-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-0-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-0-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-0-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-0-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-0-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-0-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-0-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-0-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-0-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-0-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-0-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-0-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-0-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-0-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-0-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-0-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-0-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-0-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-0-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-0-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-0-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-0-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-0-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-0-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-0-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-0-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-0-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-0-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-0-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-0-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-0-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-0-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-0-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-0-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-0-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-0-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-0-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-0-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-0-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-0-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-0-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-0-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-0-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-0-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-0-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-0-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-0-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-0-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-0-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-0-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-0-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-0-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-0-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-0-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-0-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-0-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-0-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-0-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-0-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-0-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-0-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-0-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-0-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-0-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-0-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-0-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-0-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-0-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-0-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-0-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-0-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-0-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-0-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-0-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-0-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-0-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-0-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-0-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-0-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-0-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-0-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-0-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-0-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-0-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-0-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-0-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-0-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-0-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-0-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-0-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-0-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-0-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-0-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-0-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-0-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-0-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-0-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-0-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-0-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-0-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-0-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-0-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-0-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-0-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-0-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-0-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-0-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-0-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-0-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-0-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-0-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-0-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-0-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-0-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-0-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-0-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-0-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-0-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-0-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-0-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-0-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-0-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-0-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-0-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-0-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-0-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-0-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-0-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-0-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-0-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-0-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-0-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-0-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-0-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-0-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-0-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-0-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-0-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-0-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-0-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-0-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-0-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-0-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-0-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-0-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-0-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-0-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-0-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-0-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-0-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-0-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-0-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-0-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-0-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-0-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-0-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-0-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-0-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-0-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-0-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-0-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-0-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-0-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-0-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-0-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-0-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-0-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-0-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-0-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-0-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-0-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-0-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-0-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-0-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-0-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-0-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-0-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-0-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-0-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-0-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-0-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-0-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-0-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-0-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-0-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-0-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-0-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-0-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-0-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-0-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-0-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-0-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-0-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-0-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-0-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-0-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-0-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-0-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-0-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-0-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-0-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-0-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-0-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-0-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-0-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-0-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-0-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-0-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-0-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-0-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-0-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-0-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-0-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-0-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-0-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-0-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-0-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-0-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-0-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-0-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-0-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-0-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-0-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-0-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-0-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-0-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-0-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-0-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-0-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-0-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-0-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-0-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-0-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-0-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-0-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-0-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-0-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-0-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-0-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-0-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-0-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-0-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-0-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-0-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-0-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-0-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-0-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-0-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-0-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-0-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-0-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-0-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-0-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-0-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-0-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-0-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-0-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-0-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-0-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-0-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-0-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-0-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-0-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-0-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-0-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-0-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-0-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-0-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-0-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-0-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-0-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-0-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-0-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-0-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-0-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-0-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-0-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-0-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-0-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-0-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-0-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-0-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-0-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-0-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-0-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-0-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-0-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-0-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-0-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-0-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-0-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-1-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-1-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-1-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-1-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-1-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-1-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-1-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-1-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-1-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-1-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-1-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-1-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-1-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-1-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-1-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-1-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-1-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-1-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-1-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-1-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-1-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-1-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-1-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-1-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-1-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-1-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-1-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-1-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-1-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-1-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-1-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-1-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-1-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-1-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-1-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-1-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-1-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-1-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-1-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-1-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-1-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-1-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-1-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-1-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-1-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-1-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-1-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-1-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-1-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-1-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-1-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-1-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-1-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-1-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-1-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-1-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-1-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-1-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-1-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-1-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-1-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-1-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-1-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-1-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-1-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-1-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-1-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-1-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-1-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-1-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-1-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-1-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-1-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-1-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-1-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-1-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-1-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-1-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-1-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-1-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-1-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-1-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-1-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-1-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-1-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-1-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-1-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-1-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-1-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-1-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-1-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-1-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-1-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-1-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-1-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-1-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-1-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-1-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-1-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-1-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-1-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-1-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-1-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-1-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-1-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-1-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-1-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-1-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-1-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-1-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-1-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-1-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-1-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-1-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-1-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-1-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-1-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-1-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-1-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-1-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-1-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-1-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-1-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-1-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-1-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-1-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-1-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-1-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-1-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-1-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-1-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-1-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-1-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-1-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-1-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-1-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-1-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-1-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-1-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-1-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-1-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-1-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-1-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-1-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-1-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-1-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-1-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-1-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-1-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-1-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-1-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-1-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-1-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-1-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-1-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-1-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-1-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-1-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-1-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-1-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-1-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-1-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-1-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-1-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-1-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-1-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-1-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-1-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-1-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-1-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-1-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-1-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-1-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-1-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-1-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-1-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-1-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-1-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-1-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-1-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-1-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-1-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-1-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-1-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-1-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-1-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-1-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-1-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-1-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-1-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-1-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-1-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-1-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-1-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-1-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-1-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-1-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-1-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-1-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-1-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-1-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-1-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-1-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-1-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-1-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-1-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-1-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-1-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-1-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-1-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-1-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-1-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-1-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-1-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-1-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-1-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-1-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-1-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-1-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-1-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-1-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-1-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-1-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-1-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-1-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-1-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-1-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-1-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-1-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-1-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-1-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-1-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-1-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-1-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-1-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-1-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-1-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-1-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-1-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-1-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-1-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-1-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-1-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-1-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-1-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-1-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-1-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-1-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-1-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-1-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-1-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-1-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-1-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-1-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-1-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-1-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-1-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-1-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-1-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-1-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-1-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-1-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-1-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-1-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-1-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-1-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-1-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-1-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-1-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-1-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-1-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-1-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-1-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-1-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-1-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-1-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-1-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-1-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-1-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-1-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-1-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-1-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-1-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-1-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-1-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-1-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-1-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-1-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-1-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-1-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-1-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-1-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-1-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-1-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-1-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-1-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-1-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-1-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-1-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-1-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-1-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-1-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-1-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-1-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-1-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-1-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-1-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-1-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-1-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-1-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-1-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-1-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-1-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-1-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-1-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-1-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-1-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-1-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-1-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-1-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-1-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-1-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-1-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-1-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-1-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-1-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-1-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-1-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-1-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-1-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-1-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-1-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-1-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-1-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-1-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-1-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-1-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-1-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-1-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-1-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-1-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-1-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-1-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-1-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-1-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-1-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-1-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-1-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-1-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-1-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-1-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-1-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-1-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-1-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-1-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-1-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-1-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-1-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-1-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-1-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-1-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-1-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-2-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-2-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-2-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-2-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-2-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-2-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-2-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-2-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-2-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-2-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-2-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-2-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-2-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-2-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-2-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-2-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-2-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-2-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-2-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-2-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-2-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-2-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-2-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-2-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-2-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-2-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-2-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-2-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-2-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-2-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-2-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-2-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-2-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-2-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-2-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-2-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-2-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-2-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-2-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-2-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-2-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-2-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-2-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-2-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-2-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-2-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-2-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-2-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-2-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-2-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-2-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-2-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-2-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-2-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-2-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-2-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-2-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-2-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-2-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-2-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-2-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-2-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-2-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-2-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-2-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-2-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-2-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-2-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-2-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-2-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-2-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-2-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-2-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-2-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-2-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-2-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-2-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-2-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-2-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-2-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-2-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-2-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-2-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-2-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-2-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-2-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-2-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-2-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-2-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-2-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-2-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-2-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-2-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-2-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-2-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-2-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-2-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-2-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-2-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-2-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-2-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-2-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-2-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-2-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-2-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-2-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-2-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-2-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-2-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-2-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-2-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-2-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-2-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-2-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-2-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-2-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-2-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-2-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-2-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-2-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-2-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-2-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-2-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-2-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-2-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-2-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-2-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-2-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-2-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-2-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-2-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-2-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-2-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-2-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-2-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-2-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-2-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-2-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-2-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-2-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-2-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-2-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-2-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-2-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-2-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-2-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-2-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-2-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-2-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-2-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-2-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-2-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-2-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-2-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-2-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-2-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-2-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-2-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-2-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-2-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-2-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-2-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-2-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-2-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-2-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-2-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-2-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-2-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-2-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-2-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-2-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-2-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-2-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-2-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-2-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-2-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-2-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-2-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-2-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-2-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-2-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-2-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-2-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-2-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-2-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-2-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-2-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-2-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-2-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-2-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-2-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-2-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-2-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-2-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-2-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-2-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-2-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-2-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-2-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-2-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-2-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-2-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-2-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-2-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-2-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-2-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-2-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-2-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-2-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-2-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-2-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-2-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-2-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-2-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-2-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-2-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-2-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-2-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-2-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-2-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-2-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-2-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-2-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-2-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-2-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-2-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-2-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-2-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-2-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-2-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-2-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-2-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-2-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-2-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-2-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-2-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-2-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-2-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-2-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-2-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-2-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-2-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-2-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-2-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-2-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-2-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-2-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-2-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-2-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-2-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-2-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-2-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-2-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-2-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-2-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-2-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-2-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-2-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-2-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-2-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-2-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-2-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-2-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-2-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-2-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-2-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-2-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-2-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-2-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-2-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-2-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-2-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-2-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-2-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-2-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-2-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-2-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-2-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-2-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-2-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-2-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-2-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-2-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-2-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-2-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-2-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-2-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-2-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-2-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-2-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-2-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-2-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-2-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-2-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-2-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-2-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-2-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-2-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-2-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-2-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-2-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-2-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-2-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-2-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-2-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-2-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-2-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-2-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-2-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-2-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-2-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-2-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-2-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-2-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-2-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-2-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-2-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-2-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-2-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-2-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-2-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-2-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-2-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-2-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-2-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-2-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-2-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-2-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-2-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-2-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-2-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-2-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-2-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-2-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-2-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-2-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-2-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-2-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-2-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-2-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-2-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-2-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-2-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-2-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-2-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-2-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-2-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-2-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-2-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-2-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-2-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-2-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-2-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-2-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-2-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-2-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-2-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-2-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-2-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-2-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-2-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-2-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-3-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-3-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-3-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-3-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-3-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-3-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-3-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-3-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-3-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-3-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-3-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-3-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-3-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-3-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-3-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-3-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-3-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-3-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-3-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-3-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-3-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-3-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-3-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-3-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-3-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-3-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-3-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-3-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-3-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-3-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-3-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-3-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-3-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-3-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-3-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-3-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-3-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-3-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-3-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-3-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-3-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-3-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-3-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-3-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-3-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-3-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-3-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-3-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-3-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-3-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-3-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-3-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-3-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-3-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-3-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-3-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-3-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-3-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-3-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-3-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-3-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-3-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-3-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-3-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-3-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-3-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-3-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-3-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-3-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-3-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-3-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-3-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-3-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-3-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-3-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-3-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-3-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-3-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-3-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-3-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-3-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-3-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-3-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-3-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-3-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-3-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-3-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-3-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-3-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-3-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-3-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-3-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-3-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-3-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-3-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-3-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-3-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-3-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-3-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-3-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-3-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-3-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-3-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-3-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-3-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-3-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-3-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-3-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-3-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-3-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-3-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-3-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-3-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-3-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-3-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-3-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-3-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-3-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-3-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-3-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-3-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-3-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-3-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-3-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-3-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-3-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-3-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-3-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-3-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-3-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-3-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-3-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-3-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-3-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-3-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-3-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-3-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-3-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-3-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-3-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-3-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-3-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-3-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-3-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-3-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-3-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-3-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-3-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-3-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-3-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-3-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-3-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-3-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-3-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-3-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-3-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-3-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-3-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-3-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-3-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-3-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-3-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-3-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-3-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-3-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-3-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-3-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-3-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-3-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-3-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-3-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-3-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-3-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-3-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-3-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-3-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-3-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-3-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-3-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-3-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-3-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-3-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-3-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-3-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-3-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-3-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-3-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-3-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-3-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-3-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-3-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-3-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-3-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-3-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-3-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-3-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-3-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-3-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-3-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-3-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-3-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-3-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-3-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-3-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-3-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-3-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-3-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-3-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-3-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-3-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-3-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-3-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-3-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-3-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-3-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-3-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-3-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-3-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-3-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-3-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-3-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-3-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-3-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-3-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-3-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-3-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-3-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-3-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-3-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-3-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-3-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-3-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-3-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-3-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-3-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-3-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-3-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-3-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-3-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-3-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-3-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-3-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-3-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-3-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-3-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-3-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-3-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-3-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-3-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-3-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-3-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-3-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-3-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-3-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-3-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-3-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-3-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-3-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-3-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-3-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-3-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-3-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-3-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-3-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-3-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-3-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-3-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-3-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-3-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-3-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-3-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-3-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-3-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-3-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-3-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-3-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-3-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-3-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-3-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-3-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-3-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-3-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-3-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-3-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-3-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-3-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-3-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-3-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-3-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-3-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-3-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-3-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-3-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-3-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-3-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-3-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-3-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-3-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-3-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-3-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-3-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-3-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-3-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-3-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-3-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-3-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-3-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-3-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-3-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-3-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-3-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-3-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-3-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-3-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-3-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-3-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-3-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-3-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-3-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-3-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-3-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-3-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-3-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-3-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-3-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-3-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-3-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-3-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-3-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-3-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-3-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-3-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-3-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-3-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-3-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-3-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-3-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-3-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-3-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-3-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-3-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-3-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-3-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-3-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-3-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-3-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-3-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-3-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-3-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-3-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-3-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-3-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-3-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-3-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-3-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-3-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-3-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-3-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-3-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-3-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-3-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-3-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-4-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-4-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-4-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-4-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-4-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-4-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-4-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-4-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-4-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-4-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-4-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-4-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-4-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-4-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-4-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-4-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-4-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-4-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-4-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-4-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-4-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-4-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-4-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-4-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-4-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-4-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-4-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-4-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-4-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-4-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-4-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-4-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-4-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-4-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-4-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-4-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-4-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-4-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-4-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-4-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-4-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-4-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-4-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-4-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-4-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-4-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-4-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-4-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-4-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-4-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-4-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-4-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-4-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-4-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-4-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-4-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-4-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-4-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-4-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-4-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-4-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-4-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-4-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-4-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-4-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-4-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-4-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-4-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-4-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-4-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-4-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-4-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-4-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-4-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-4-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-4-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-4-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-4-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-4-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-4-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-4-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-4-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-4-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-4-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-4-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-4-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-4-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-4-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-4-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-4-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-4-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-4-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-4-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-4-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-4-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-4-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-4-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-4-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-4-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-4-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-4-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-4-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-4-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-4-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-4-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-4-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-4-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-4-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-4-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-4-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-4-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-4-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-4-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-4-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-4-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-4-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-4-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-4-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-4-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-4-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-4-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-4-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-4-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-4-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-4-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-4-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-4-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-4-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-4-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-4-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-4-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-4-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-4-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-4-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-4-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-4-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-4-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-4-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-4-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-4-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-4-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-4-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-4-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-4-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-4-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-4-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-4-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-4-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-4-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-4-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-4-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-4-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-4-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-4-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-4-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-4-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-4-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-4-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-4-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-4-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-4-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-4-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-4-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-4-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-4-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-4-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-4-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-4-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-4-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-4-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-4-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-4-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-4-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-4-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-4-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-4-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-4-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-4-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-4-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-4-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-4-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-4-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-4-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-4-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-4-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-4-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-4-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-4-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-4-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-4-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-4-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-4-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-4-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-4-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-4-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-4-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-4-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-4-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-4-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-4-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-4-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-4-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-4-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-4-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-4-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-4-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-4-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-4-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-4-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-4-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-4-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-4-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-4-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-4-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-4-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-4-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-4-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-4-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-4-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-4-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-4-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-4-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-4-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-4-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-4-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-4-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-4-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-4-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-4-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-4-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-4-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-4-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-4-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-4-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-4-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-4-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-4-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-4-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-4-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-4-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-4-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-4-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-4-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-4-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-4-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-4-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-4-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-4-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-4-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-4-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-4-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-4-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-4-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-4-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-4-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-4-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-4-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-4-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-4-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-4-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-4-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-4-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-4-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-4-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-4-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-4-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-4-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-4-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-4-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-4-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-4-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-4-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-4-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-4-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-4-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-4-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-4-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-4-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-4-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-4-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-4-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-4-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-4-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-4-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-4-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-4-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-4-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-4-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-4-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-4-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-4-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-4-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-4-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-4-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-4-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-4-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-4-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-4-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-4-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-4-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-4-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-4-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-4-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-4-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-4-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-4-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-4-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-4-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-4-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-4-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-4-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-4-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-4-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-4-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-4-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-4-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-4-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-4-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-4-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-4-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-4-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-4-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-4-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-4-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-4-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-4-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-4-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-4-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-4-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-4-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-4-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-4-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-4-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-4-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-4-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-4-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-4-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-4-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-4-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-4-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-4-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-4-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-4-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-4-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-4-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-4-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-4-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-4-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-4-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-4-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-4-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-4-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-4-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-4-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-4-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-4-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-4-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-4-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-4-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-4-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-4-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-4-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-5-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-5-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-5-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-5-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-5-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-5-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-5-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-5-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-5-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-5-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-5-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-5-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-5-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-5-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-5-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-5-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-5-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-5-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-5-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-5-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-5-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-5-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-5-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-5-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-5-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-5-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-5-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-5-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-5-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-5-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-5-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-5-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-5-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-5-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-5-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-5-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-5-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-5-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-5-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-5-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-5-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-5-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-5-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-5-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-5-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-5-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-5-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-5-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-5-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-5-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-5-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-5-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-5-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-5-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-5-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-5-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-5-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-5-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-5-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-5-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-5-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-5-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-5-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-5-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-5-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-5-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-5-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-5-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-5-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-5-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-5-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-5-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-5-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-5-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-5-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-5-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-5-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-5-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-5-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-5-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-5-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-5-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-5-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-5-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-5-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-5-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-5-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-5-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-5-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-5-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-5-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-5-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-5-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-5-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-5-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-5-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-5-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-5-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-5-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-5-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-5-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-5-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-5-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-5-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-5-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-5-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-5-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-5-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-5-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-5-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-5-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-5-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-5-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-5-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-5-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-5-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-5-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-5-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-5-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-5-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-5-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-5-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-5-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-5-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-5-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-5-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-5-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-5-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-5-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-5-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-5-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-5-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-5-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-5-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-5-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-5-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-5-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-5-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-5-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-5-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-5-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-5-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-5-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-5-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-5-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-5-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-5-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-5-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-5-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-5-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-5-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-5-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-5-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-5-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-5-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-5-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-5-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-5-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-5-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-5-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-5-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-5-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-5-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-5-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-5-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-5-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-5-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-5-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-5-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-5-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-5-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-5-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-5-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-5-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-5-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-5-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-5-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-5-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-5-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-5-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-5-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-5-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-5-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-5-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-5-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-5-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-5-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-5-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-5-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-5-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-5-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-5-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-5-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-5-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-5-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-5-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-5-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-5-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-5-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-5-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-5-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-5-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-5-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-5-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-5-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-5-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-5-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-5-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-5-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-5-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-5-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-5-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-5-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-5-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-5-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-5-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-5-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-5-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-5-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-5-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-5-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-5-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-5-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-5-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-5-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-5-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-5-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-5-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-5-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-5-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-5-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-5-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-5-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-5-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-5-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-5-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-5-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-5-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-5-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-5-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-5-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-5-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-5-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-5-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-5-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-5-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-5-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-5-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-5-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-5-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-5-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-5-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-5-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-5-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-5-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-5-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-5-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-5-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-5-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-5-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-5-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-5-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-5-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-5-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-5-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-5-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-5-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-5-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-5-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-5-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-5-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-5-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-5-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-5-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-5-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-5-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-5-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-5-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-5-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-5-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-5-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-5-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-5-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-5-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-5-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-5-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-5-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-5-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-5-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-5-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-5-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-5-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-5-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-5-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-5-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-5-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-5-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-5-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-5-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-5-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-5-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-5-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-5-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-5-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-5-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-5-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-5-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-5-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-5-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-5-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-5-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-5-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-5-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-5-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-5-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-5-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-5-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-5-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-5-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-5-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-5-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-5-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-5-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-5-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-5-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-5-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-5-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-5-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-5-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-5-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-5-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-5-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-5-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-5-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-5-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-5-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-5-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-5-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-5-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-5-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-5-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-5-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-5-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-5-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-5-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-5-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-5-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-5-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-5-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-5-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-5-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-5-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-5-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-5-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-5-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-5-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-5-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-5-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-5-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-5-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-5-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-5-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-6-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-6-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-6-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-6-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-6-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-6-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-6-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-6-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-6-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-6-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-6-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-6-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-6-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-6-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-6-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-6-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-6-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-6-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-6-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-6-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-6-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-6-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-6-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-6-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-6-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-6-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-6-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-6-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-6-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-6-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-6-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-6-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-6-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-6-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-6-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-6-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-6-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-6-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-6-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-6-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-6-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-6-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-6-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-6-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-6-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-6-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-6-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-6-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-6-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-6-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-6-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-6-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-6-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-6-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-6-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-6-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-6-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-6-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-6-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-6-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-6-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-6-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-6-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-6-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-6-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-6-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-6-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-6-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-6-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-6-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-6-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-6-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-6-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-6-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-6-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-6-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-6-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-6-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-6-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-6-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-6-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-6-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-6-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-6-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-6-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-6-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-6-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-6-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-6-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-6-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-6-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-6-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-6-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-6-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-6-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-6-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-6-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-6-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-6-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-6-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-6-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-6-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-6-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-6-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-6-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-6-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-6-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-6-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-6-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-6-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-6-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-6-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-6-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-6-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-6-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-6-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-6-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-6-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-6-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-6-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-6-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-6-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-6-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-6-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-6-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-6-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-6-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-6-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-6-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-6-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-6-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-6-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-6-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-6-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-6-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-6-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-6-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-6-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-6-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-6-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-6-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-6-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-6-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-6-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-6-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-6-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-6-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-6-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-6-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-6-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-6-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-6-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-6-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-6-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-6-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-6-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-6-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-6-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-6-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-6-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-6-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-6-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-6-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-6-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-6-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-6-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-6-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-6-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-6-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-6-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-6-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-6-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-6-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-6-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-6-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-6-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-6-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-6-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-6-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-6-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-6-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-6-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-6-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-6-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-6-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-6-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-6-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-6-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-6-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-6-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-6-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-6-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-6-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-6-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-6-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-6-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-6-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-6-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-6-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-6-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-6-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-6-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-6-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-6-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-6-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-6-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-6-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-6-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-6-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-6-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-6-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-6-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-6-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-6-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-6-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-6-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-6-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-6-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-6-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-6-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-6-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-6-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-6-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-6-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-6-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-6-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-6-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-6-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-6-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-6-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-6-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-6-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-6-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-6-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-6-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-6-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-6-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-6-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-6-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-6-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-6-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-6-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-6-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-6-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-6-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-6-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-6-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-6-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-6-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-6-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-6-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-6-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-6-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-6-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-6-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-6-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-6-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-6-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-6-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-6-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-6-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-6-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-6-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-6-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-6-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-6-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-6-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-6-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-6-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-6-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-6-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-6-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-6-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-6-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-6-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-6-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-6-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-6-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-6-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-6-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-6-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-6-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-6-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-6-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-6-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-6-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-6-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-6-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-6-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-6-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-6-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-6-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-6-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-6-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-6-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-6-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-6-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-6-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-6-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-6-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-6-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-6-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-6-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-6-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-6-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-6-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-6-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-6-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-6-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-6-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-6-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-6-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-6-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-6-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-6-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-6-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-6-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-6-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-6-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-6-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-6-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-6-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-6-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-6-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-6-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-6-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-6-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-6-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-6-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-6-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-6-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-6-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-6-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-6-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-6-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-6-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-6-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-6-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-6-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-6-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-6-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-6-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-6-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-6-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-6-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-6-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-6-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-6-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-6-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-6-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-6-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-6-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-6-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-6-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-6-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-6-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-6-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-6-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-6-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-6-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-6-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-6-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-7-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-7-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-7-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-7-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-7-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-7-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-7-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-7-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-7-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-7-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-7-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-7-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-7-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-7-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-7-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-7-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-7-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-7-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-7-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-7-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-7-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-7-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-7-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-7-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-7-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-7-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-7-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-7-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-7-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-7-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-7-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-7-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-7-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-7-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-7-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-7-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-7-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-7-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-7-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-7-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-7-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-7-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-7-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-7-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-7-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-7-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-7-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-7-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-7-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-7-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-7-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-7-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-7-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-7-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-7-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-7-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-7-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-7-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-7-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-7-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-7-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-7-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-7-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-7-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-7-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-7-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-7-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-7-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-7-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-7-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-7-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-7-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-7-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-7-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-7-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-7-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-7-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-7-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-7-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-7-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-7-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-7-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-7-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-7-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-7-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-7-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-7-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-7-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-7-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-7-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-7-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-7-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-7-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-7-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-7-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-7-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-7-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-7-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-7-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-7-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-7-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-7-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-7-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-7-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-7-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-7-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-7-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-7-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-7-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-7-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-7-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-7-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-7-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-7-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-7-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-7-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-7-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-7-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-7-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-7-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-7-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-7-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-7-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-7-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-7-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-7-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-7-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-7-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-7-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-7-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-7-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-7-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-7-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-7-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-7-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-7-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-7-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-7-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-7-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-7-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-7-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-7-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-7-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-7-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-7-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-7-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-7-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-7-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-7-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-7-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-7-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-7-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-7-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-7-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-7-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-7-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-7-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-7-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-7-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-7-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-7-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-7-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-7-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-7-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-7-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-7-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-7-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-7-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-7-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-7-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-7-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-7-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-7-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-7-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-7-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-7-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-7-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-7-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-7-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-7-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-7-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-7-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-7-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-7-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-7-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-7-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-7-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-7-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-7-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-7-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-7-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-7-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-7-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-7-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-7-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-7-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-7-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-7-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-7-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-7-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-7-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-7-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-7-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-7-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-7-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-7-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-7-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-7-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-7-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-7-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-7-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-7-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-7-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-7-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-7-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-7-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-7-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-7-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-7-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-7-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-7-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-7-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-7-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-7-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-7-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-7-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-7-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-7-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-7-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-7-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-7-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-7-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-7-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-7-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-7-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-7-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-7-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-7-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-7-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-7-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-7-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-7-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-7-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-7-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-7-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-7-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-7-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-7-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-7-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-7-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-7-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-7-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-7-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-7-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-7-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-7-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-7-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-7-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-7-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-7-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-7-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-7-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-7-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-7-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-7-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-7-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-7-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-7-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-7-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-7-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-7-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-7-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-7-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-7-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-7-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-7-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-7-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-7-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-7-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-7-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-7-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-7-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-7-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-7-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-7-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-7-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-7-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-7-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L1-7-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L1-7-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L1-7-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L1-7-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L1-7-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L1-7-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L1-7-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L1-7-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L1-7-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L1-7-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L1-7-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L1-7-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L1-7-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L1-7-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L1-7-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L1-7-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L1-7-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L1-7-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L1-7-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L1-7-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L1-7-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L1-7-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L1-7-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L1-7-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L1-7-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L1-7-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L1-7-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L1-7-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L1-7-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L1-7-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L1-7-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L1-7-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L1-7-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L1-7-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L1-7-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L1-7-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L1-7-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L1-7-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-0-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-0-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-0-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-0-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-0-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-0-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-0-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-0-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-0-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-0-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-0-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-0-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-0-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-0-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-0-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-0-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-0-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-0-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-0-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-0-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-0-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-0-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-0-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-0-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-0-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-0-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-0-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-0-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-0-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-0-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-0-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-0-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-0-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-0-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-0-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-0-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-0-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-0-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-0-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-0-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-0-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-0-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-0-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-0-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-0-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-0-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-0-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-0-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-0-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-0-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-0-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-0-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-0-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-0-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-0-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-0-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-0-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-0-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-0-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-0-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-0-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-0-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-0-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-0-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-0-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-0-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-0-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-0-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-0-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-0-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-0-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-0-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-0-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-0-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-0-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-0-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-0-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-0-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-0-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-0-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-0-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-0-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-0-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-0-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-0-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-0-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-0-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-0-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-0-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-0-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-0-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-0-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-0-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-0-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-0-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-0-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-0-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-0-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-0-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-0-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-0-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-0-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-0-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-0-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-0-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-0-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-0-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-0-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-0-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-0-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-0-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-0-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-0-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-0-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-0-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-0-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-0-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-0-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-0-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-0-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-0-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-0-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-0-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-0-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-0-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-0-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-0-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-0-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-0-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-0-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-0-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-0-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-0-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-0-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-0-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-0-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-0-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-0-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-0-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-0-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-0-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-0-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-0-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-0-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-0-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-0-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-0-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-0-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-0-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-0-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-0-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-0-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-0-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-0-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-0-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-0-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-0-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-0-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-0-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-0-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-0-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-0-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-0-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-0-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-0-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-0-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-0-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-0-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-0-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-0-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-0-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-0-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-0-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-0-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-0-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-0-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-0-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-0-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-0-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-0-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-0-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-0-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-0-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-0-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-0-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-0-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-0-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-0-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-0-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-0-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-0-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-0-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-0-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-0-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-0-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-0-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-0-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-0-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-0-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-0-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-0-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-0-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-0-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-0-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-0-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-0-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-0-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-0-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-0-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-0-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-0-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-0-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-0-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-0-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-0-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-0-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-0-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-0-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-0-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-0-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-0-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-0-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-0-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-0-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-0-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-0-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-0-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-0-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-0-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-0-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-0-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-0-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-0-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-0-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-0-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-0-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-0-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-0-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-0-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-0-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-0-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-0-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-0-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-0-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-0-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-0-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-0-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-0-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-0-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-0-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-0-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-0-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-0-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-0-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-0-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-0-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-0-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-0-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-0-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-0-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-0-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-0-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-0-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-0-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-0-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-0-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-0-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-0-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-0-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-0-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-0-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-0-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-0-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-0-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-0-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-0-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-0-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-0-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-0-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-0-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-0-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-0-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-0-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-0-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-0-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-0-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-0-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-0-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-0-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-0-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-0-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-0-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-0-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-0-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-0-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-0-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-0-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-0-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-0-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-0-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-0-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-0-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-0-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-0-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-0-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-0-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-0-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-0-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-0-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-0-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-0-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-0-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-0-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-0-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-0-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-0-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-0-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-0-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-0-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-0-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-0-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-0-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-0-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-0-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-0-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-0-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-1-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-1-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-1-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-1-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-1-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-1-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-1-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-1-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-1-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-1-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-1-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-1-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-1-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-1-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-1-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-1-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-1-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-1-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-1-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-1-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-1-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-1-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-1-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-1-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-1-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-1-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-1-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-1-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-1-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-1-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-1-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-1-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-1-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-1-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-1-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-1-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-1-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-1-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-1-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-1-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-1-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-1-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-1-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-1-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-1-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-1-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-1-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-1-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-1-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-1-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-1-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-1-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-1-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-1-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-1-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-1-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-1-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-1-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-1-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-1-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-1-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-1-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-1-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-1-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-1-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-1-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-1-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-1-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-1-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-1-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-1-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-1-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-1-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-1-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-1-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-1-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-1-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-1-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-1-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-1-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-1-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-1-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-1-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-1-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-1-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-1-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-1-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-1-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-1-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-1-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-1-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-1-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-1-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-1-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-1-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-1-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-1-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-1-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-1-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-1-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-1-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-1-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-1-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-1-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-1-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-1-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-1-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-1-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-1-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-1-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-1-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-1-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-1-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-1-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-1-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-1-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-1-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-1-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-1-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-1-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-1-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-1-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-1-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-1-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-1-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-1-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-1-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-1-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-1-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-1-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-1-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-1-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-1-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-1-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-1-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-1-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-1-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-1-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-1-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-1-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-1-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-1-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-1-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-1-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-1-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-1-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-1-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-1-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-1-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-1-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-1-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-1-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-1-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-1-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-1-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-1-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-1-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-1-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-1-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-1-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-1-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-1-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-1-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-1-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-1-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-1-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-1-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-1-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-1-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-1-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-1-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-1-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-1-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-1-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-1-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-1-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-1-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-1-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-1-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-1-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-1-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-1-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-1-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-1-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-1-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-1-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-1-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-1-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-1-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-1-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-1-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-1-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-1-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-1-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-1-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-1-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-1-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-1-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-1-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-1-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-1-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-1-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-1-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-1-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-1-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-1-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-1-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-1-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-1-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-1-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-1-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-1-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-1-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-1-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-1-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-1-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-1-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-1-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-1-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-1-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-1-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-1-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-1-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-1-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-1-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-1-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-1-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-1-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-1-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-1-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-1-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-1-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-1-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-1-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-1-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-1-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-1-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-1-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-1-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-1-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-1-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-1-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-1-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-1-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-1-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-1-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-1-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-1-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-1-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-1-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-1-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-1-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-1-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-1-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-1-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-1-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-1-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-1-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-1-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-1-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-1-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-1-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-1-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-1-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-1-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-1-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-1-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-1-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-1-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-1-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-1-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-1-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-1-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-1-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-1-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-1-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-1-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-1-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-1-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-1-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-1-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-1-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-1-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-1-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-1-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-1-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-1-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-1-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-1-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-1-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-1-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-1-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-1-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-1-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-1-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-1-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-1-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-1-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-1-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-1-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-1-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-1-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-1-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-1-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-1-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-1-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-1-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-1-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-1-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-1-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-1-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-1-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-1-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-1-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-1-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-1-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-1-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-1-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-1-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-1-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-1-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-1-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-1-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-1-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-1-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-1-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-1-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-1-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-1-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-1-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-1-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-1-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-1-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-1-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-1-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-1-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-1-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-1-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-1-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-1-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-1-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-1-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-1-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-1-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-1-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-1-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-1-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-1-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-1-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-1-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-1-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-1-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-1-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-1-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-1-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-1-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-1-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-1-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-1-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-1-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-1-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-1-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-2-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-2-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-2-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-2-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-2-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-2-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-2-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-2-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-2-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-2-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-2-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-2-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-2-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-2-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-2-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-2-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-2-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-2-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-2-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-2-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-2-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-2-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-2-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-2-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-2-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-2-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-2-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-2-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-2-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-2-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-2-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-2-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-2-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-2-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-2-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-2-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-2-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-2-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-2-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-2-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-2-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-2-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-2-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-2-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-2-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-2-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-2-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-2-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-2-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-2-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-2-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-2-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-2-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-2-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-2-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-2-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-2-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-2-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-2-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-2-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-2-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-2-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-2-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-2-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-2-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-2-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-2-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-2-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-2-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-2-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-2-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-2-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-2-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-2-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-2-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-2-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-2-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-2-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-2-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-2-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-2-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-2-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-2-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-2-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-2-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-2-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-2-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-2-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-2-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-2-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-2-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-2-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-2-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-2-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-2-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-2-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-2-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-2-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-2-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-2-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-2-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-2-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-2-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-2-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-2-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-2-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-2-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-2-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-2-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-2-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-2-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-2-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-2-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-2-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-2-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-2-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-2-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-2-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-2-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-2-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-2-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-2-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-2-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-2-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-2-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-2-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-2-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-2-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-2-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-2-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-2-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-2-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-2-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-2-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-2-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-2-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-2-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-2-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-2-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-2-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-2-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-2-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-2-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-2-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-2-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-2-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-2-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-2-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-2-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-2-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-2-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-2-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-2-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-2-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-2-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-2-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-2-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-2-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-2-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-2-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-2-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-2-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-2-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-2-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-2-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-2-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-2-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-2-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-2-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-2-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-2-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-2-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-2-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-2-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-2-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-2-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-2-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-2-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-2-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-2-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-2-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-2-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-2-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-2-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-2-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-2-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-2-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-2-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-2-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-2-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-2-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-2-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-2-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-2-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-2-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-2-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-2-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-2-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-2-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-2-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-2-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-2-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-2-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-2-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-2-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-2-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-2-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-2-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-2-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-2-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-2-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-2-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-2-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-2-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-2-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-2-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-2-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-2-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-2-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-2-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-2-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-2-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-2-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-2-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-2-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-2-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-2-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-2-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-2-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-2-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-2-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-2-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-2-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-2-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-2-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-2-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-2-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-2-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-2-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-2-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-2-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-2-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-2-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-2-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-2-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-2-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-2-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-2-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-2-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-2-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-2-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-2-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-2-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-2-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-2-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-2-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-2-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-2-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-2-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-2-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-2-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-2-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-2-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-2-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-2-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-2-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-2-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-2-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-2-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-2-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-2-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-2-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-2-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-2-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-2-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-2-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-2-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-2-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-2-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-2-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-2-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-2-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-2-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-2-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-2-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-2-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-2-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-2-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-2-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-2-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-2-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-2-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-2-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-2-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-2-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-2-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-2-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-2-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-2-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-2-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-2-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-2-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-2-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-2-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-2-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-2-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-2-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-2-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-2-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-2-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-2-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-2-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-2-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-2-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-2-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-2-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-2-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-2-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-2-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-2-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-2-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-2-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-2-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-2-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-2-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-2-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-2-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-2-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-2-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-2-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-2-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-2-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-2-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-2-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-2-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-2-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-2-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-2-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-2-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-2-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-2-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-2-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-2-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-2-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-2-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-2-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-2-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-2-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-2-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-2-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-2-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-2-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-2-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-2-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-2-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-2-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-2-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-2-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-2-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-2-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-2-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-2-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-3-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-3-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-3-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-3-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-3-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-3-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-3-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-3-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-3-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-3-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-3-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-3-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-3-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-3-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-3-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-3-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-3-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-3-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-3-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-3-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-3-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-3-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-3-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-3-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-3-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-3-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-3-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-3-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-3-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-3-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-3-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-3-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-3-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-3-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-3-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-3-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-3-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-3-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-3-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-3-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-3-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-3-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-3-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-3-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-3-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-3-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-3-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-3-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-3-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-3-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-3-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-3-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-3-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-3-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-3-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-3-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-3-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-3-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-3-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-3-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-3-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-3-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-3-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-3-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-3-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-3-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-3-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-3-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-3-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-3-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-3-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-3-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-3-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-3-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-3-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-3-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-3-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-3-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-3-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-3-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-3-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-3-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-3-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-3-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-3-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-3-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-3-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-3-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-3-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-3-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-3-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-3-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-3-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-3-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-3-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-3-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-3-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-3-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-3-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-3-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-3-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-3-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-3-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-3-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-3-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-3-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-3-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-3-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-3-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-3-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-3-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-3-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-3-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-3-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-3-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-3-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-3-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-3-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-3-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-3-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-3-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-3-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-3-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-3-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-3-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-3-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-3-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-3-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-3-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-3-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-3-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-3-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-3-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-3-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-3-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-3-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-3-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-3-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-3-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-3-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-3-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-3-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-3-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-3-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-3-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-3-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-3-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-3-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-3-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-3-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-3-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-3-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-3-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-3-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-3-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-3-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-3-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-3-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-3-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-3-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-3-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-3-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-3-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-3-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-3-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-3-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-3-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-3-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-3-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-3-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-3-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-3-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-3-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-3-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-3-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-3-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-3-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-3-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-3-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-3-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-3-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-3-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-3-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-3-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-3-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-3-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-3-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-3-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-3-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-3-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-3-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-3-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-3-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-3-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-3-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-3-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-3-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-3-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-3-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-3-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-3-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-3-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-3-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-3-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-3-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-3-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-3-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-3-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-3-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-3-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-3-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-3-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-3-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-3-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-3-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-3-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-3-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-3-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-3-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-3-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-3-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-3-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-3-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-3-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-3-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-3-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-3-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-3-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-3-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-3-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-3-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-3-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-3-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-3-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-3-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-3-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-3-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-3-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-3-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-3-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-3-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-3-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-3-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-3-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-3-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-3-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-3-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-3-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-3-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-3-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-3-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-3-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-3-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-3-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-3-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-3-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-3-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-3-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-3-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-3-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-3-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-3-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-3-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-3-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-3-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-3-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-3-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-3-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-3-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-3-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-3-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-3-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-3-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-3-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-3-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-3-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-3-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-3-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-3-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-3-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-3-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-3-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-3-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-3-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-3-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-3-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-3-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-3-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-3-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-3-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-3-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-3-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-3-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-3-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-3-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-3-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-3-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-3-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-3-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-3-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-3-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-3-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-3-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-3-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-3-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-3-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-3-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-3-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-3-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-3-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-3-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-3-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-3-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-3-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-3-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-3-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-3-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-3-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-3-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-3-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-3-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-3-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-3-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-3-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-3-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-3-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-3-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-3-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-3-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-3-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-3-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-3-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-3-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-3-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-3-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-3-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-3-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-3-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-3-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-3-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-3-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-3-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-3-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-3-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-3-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-3-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-3-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-3-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-3-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-3-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-3-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-3-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-3-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-3-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-3-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-3-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-3-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-3-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-3-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-3-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-3-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-3-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-4-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-4-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-4-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-4-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-4-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-4-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-4-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-4-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-4-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-4-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-4-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-4-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-4-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-4-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-4-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-4-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-4-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-4-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-4-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-4-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-4-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-4-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-4-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-4-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-4-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-4-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-4-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-4-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-4-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-4-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-4-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-4-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-4-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-4-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-4-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-4-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-4-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-4-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-4-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-4-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-4-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-4-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-4-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-4-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-4-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-4-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-4-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-4-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-4-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-4-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-4-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-4-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-4-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-4-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-4-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-4-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-4-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-4-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-4-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-4-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-4-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-4-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-4-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-4-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-4-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-4-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-4-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-4-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-4-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-4-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-4-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-4-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-4-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-4-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-4-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-4-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-4-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-4-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-4-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-4-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-4-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-4-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-4-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-4-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-4-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-4-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-4-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-4-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-4-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-4-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-4-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-4-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-4-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-4-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-4-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-4-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-4-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-4-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-4-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-4-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-4-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-4-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-4-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-4-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-4-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-4-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-4-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-4-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-4-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-4-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-4-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-4-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-4-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-4-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-4-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-4-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-4-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-4-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-4-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-4-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-4-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-4-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-4-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-4-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-4-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-4-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-4-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-4-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-4-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-4-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-4-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-4-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-4-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-4-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-4-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-4-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-4-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-4-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-4-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-4-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-4-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-4-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-4-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-4-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-4-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-4-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-4-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-4-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-4-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-4-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-4-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-4-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-4-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-4-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-4-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-4-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-4-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-4-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-4-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-4-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-4-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-4-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-4-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-4-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-4-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-4-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-4-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-4-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-4-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-4-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-4-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-4-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-4-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-4-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-4-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-4-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-4-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-4-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-4-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-4-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-4-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-4-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-4-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-4-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-4-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-4-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-4-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-4-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-4-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-4-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-4-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-4-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-4-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-4-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-4-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-4-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-4-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-4-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-4-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-4-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-4-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-4-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-4-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-4-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-4-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-4-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-4-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-4-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-4-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-4-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-4-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-4-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-4-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-4-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-4-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-4-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-4-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-4-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-4-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-4-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-4-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-4-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-4-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-4-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-4-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-4-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-4-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-4-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-4-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-4-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-4-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-4-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-4-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-4-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-4-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-4-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-4-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-4-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-4-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-4-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-4-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-4-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-4-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-4-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-4-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-4-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-4-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-4-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-4-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-4-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-4-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-4-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-4-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-4-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-4-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-4-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-4-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-4-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-4-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-4-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-4-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-4-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-4-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-4-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-4-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-4-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-4-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-4-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-4-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-4-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-4-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-4-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-4-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-4-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-4-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-4-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-4-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-4-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-4-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-4-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-4-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-4-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-4-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-4-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-4-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-4-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-4-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-4-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-4-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-4-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-4-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-4-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-4-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-4-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-4-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-4-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-4-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-4-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-4-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-4-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-4-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-4-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-4-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-4-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-4-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-4-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-4-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-4-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-4-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-4-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-4-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-4-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-4-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-4-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-4-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-4-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-4-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-4-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-4-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-4-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-4-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-4-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-4-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-4-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-4-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-4-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-4-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-4-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-4-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-4-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-4-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-4-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-4-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-4-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-4-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-4-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-4-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-4-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-4-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-4-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-4-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-4-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-4-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-4-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-4-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-4-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-4-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-4-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-4-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-4-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-4-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-4-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-4-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-4-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-4-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-4-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-4-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-4-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-4-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-4-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-4-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-4-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-5-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-5-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-5-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-5-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-5-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-5-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-5-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-5-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-5-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-5-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-5-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-5-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-5-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-5-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-5-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-5-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-5-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-5-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-5-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-5-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-5-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-5-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-5-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-5-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-5-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-5-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-5-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-5-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-5-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-5-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-5-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-5-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-5-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-5-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-5-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-5-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-5-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-5-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-5-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-5-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-5-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-5-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-5-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-5-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-5-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-5-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-5-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-5-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-5-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-5-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-5-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-5-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-5-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-5-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-5-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-5-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-5-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-5-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-5-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-5-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-5-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-5-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-5-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-5-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-5-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-5-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-5-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-5-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-5-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-5-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-5-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-5-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-5-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-5-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-5-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-5-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-5-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-5-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-5-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-5-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-5-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-5-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-5-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-5-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-5-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-5-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-5-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-5-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-5-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-5-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-5-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-5-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-5-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-5-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-5-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-5-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-5-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-5-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-5-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-5-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-5-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-5-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-5-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-5-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-5-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-5-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-5-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-5-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-5-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-5-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-5-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-5-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-5-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-5-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-5-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-5-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-5-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-5-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-5-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-5-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-5-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-5-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-5-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-5-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-5-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-5-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-5-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-5-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-5-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-5-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-5-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-5-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-5-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-5-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-5-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-5-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-5-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-5-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-5-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-5-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-5-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-5-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-5-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-5-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-5-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-5-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-5-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-5-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-5-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-5-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-5-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-5-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-5-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-5-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-5-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-5-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-5-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-5-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-5-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-5-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-5-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-5-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-5-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-5-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-5-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-5-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-5-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-5-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-5-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-5-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-5-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-5-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-5-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-5-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-5-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-5-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-5-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-5-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-5-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-5-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-5-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-5-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-5-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-5-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-5-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-5-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-5-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-5-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-5-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-5-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-5-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-5-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-5-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-5-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-5-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-5-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-5-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-5-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-5-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-5-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-5-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-5-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-5-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-5-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-5-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-5-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-5-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-5-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-5-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-5-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-5-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-5-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-5-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-5-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-5-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-5-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-5-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-5-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-5-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-5-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-5-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-5-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-5-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-5-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-5-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-5-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-5-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-5-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-5-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-5-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-5-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-5-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-5-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-5-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-5-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-5-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-5-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-5-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-5-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-5-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-5-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-5-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-5-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-5-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-5-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-5-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-5-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-5-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-5-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-5-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-5-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-5-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-5-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-5-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-5-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-5-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-5-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-5-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-5-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-5-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-5-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-5-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-5-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-5-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-5-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-5-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-5-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-5-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-5-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-5-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-5-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-5-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-5-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-5-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-5-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-5-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-5-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-5-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-5-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-5-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-5-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-5-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-5-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-5-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-5-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-5-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-5-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-5-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-5-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-5-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-5-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-5-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-5-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-5-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-5-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-5-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-5-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-5-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-5-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-5-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-5-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-5-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-5-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-5-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-5-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-5-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-5-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-5-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-5-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-5-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-5-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-5-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-5-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-5-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-5-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-5-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-5-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-5-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-5-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-5-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-5-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-5-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-5-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-5-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-5-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-5-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-5-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-5-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-5-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-5-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-5-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-5-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-5-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-5-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-5-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-5-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-5-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-5-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-5-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-5-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-5-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-5-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-5-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-5-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-5-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-5-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-5-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-5-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-5-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-5-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-5-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-5-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-5-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-5-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-5-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-5-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-5-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-5-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-5-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-5-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-5-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-5-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-6-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-6-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-6-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-6-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-6-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-6-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-6-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-6-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-6-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-6-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-6-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-6-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-6-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-6-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-6-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-6-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-6-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-6-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-6-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-6-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-6-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-6-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-6-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-6-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-6-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-6-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-6-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-6-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-6-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-6-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-6-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-6-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-6-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-6-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-6-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-6-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-6-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-6-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-6-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-6-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-6-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-6-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-6-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-6-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-6-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-6-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-6-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-6-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-6-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-6-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-6-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-6-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-6-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-6-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-6-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-6-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-6-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-6-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-6-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-6-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-6-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-6-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-6-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-6-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-6-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-6-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-6-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-6-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-6-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-6-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-6-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-6-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-6-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-6-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-6-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-6-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-6-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-6-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-6-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-6-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-6-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-6-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-6-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-6-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-6-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-6-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-6-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-6-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-6-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-6-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-6-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-6-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-6-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-6-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-6-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-6-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-6-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-6-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-6-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-6-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-6-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-6-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-6-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-6-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-6-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-6-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-6-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-6-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-6-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-6-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-6-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-6-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-6-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-6-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-6-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-6-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-6-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-6-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-6-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-6-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-6-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-6-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-6-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-6-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-6-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-6-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-6-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-6-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-6-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-6-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-6-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-6-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-6-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-6-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-6-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-6-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-6-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-6-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-6-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-6-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-6-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-6-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-6-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-6-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-6-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-6-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-6-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-6-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-6-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-6-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-6-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-6-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-6-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-6-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-6-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-6-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-6-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-6-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-6-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-6-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-6-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-6-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-6-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-6-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-6-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-6-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-6-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-6-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-6-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-6-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-6-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-6-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-6-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-6-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-6-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-6-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-6-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-6-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-6-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-6-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-6-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-6-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-6-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-6-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-6-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-6-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-6-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-6-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-6-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-6-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-6-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-6-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-6-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-6-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-6-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-6-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-6-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-6-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-6-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-6-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-6-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-6-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-6-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-6-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-6-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-6-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-6-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-6-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-6-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-6-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-6-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-6-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-6-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-6-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-6-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-6-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-6-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-6-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-6-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-6-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-6-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-6-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-6-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-6-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-6-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-6-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-6-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-6-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-6-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-6-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-6-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-6-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-6-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-6-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-6-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-6-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-6-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-6-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-6-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-6-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-6-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-6-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-6-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-6-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-6-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-6-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-6-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-6-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-6-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-6-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-6-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-6-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-6-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-6-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-6-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-6-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-6-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-6-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-6-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-6-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-6-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-6-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-6-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-6-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-6-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-6-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-6-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-6-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-6-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-6-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-6-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-6-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-6-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-6-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-6-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-6-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-6-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-6-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-6-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-6-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-6-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-6-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-6-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-6-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-6-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-6-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-6-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-6-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-6-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-6-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-6-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-6-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-6-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-6-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-6-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-6-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-6-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-6-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-6-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-6-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-6-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-6-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-6-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-6-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-6-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-6-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-6-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-6-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-6-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-6-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-6-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-6-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-6-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-6-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-6-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-6-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-6-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-6-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-6-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-6-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-6-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-6-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-6-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-6-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-6-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-6-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-6-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-6-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-6-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-6-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-6-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-6-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-6-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-6-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-6-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-6-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-6-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-6-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-6-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-6-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-6-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-6-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-6-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-6-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-6-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-6-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-6-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-6-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-6-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-6-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-6-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-6-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-6-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-6-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-6-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-6-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-6-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-6-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-6-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-6-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-6-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-6-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-7-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-7-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-7-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-7-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-7-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-7-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-7-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-7-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-7-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-7-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-7-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-7-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-7-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-7-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-7-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-7-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-7-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-7-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-7-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-7-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-7-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-7-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-7-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-7-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-7-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-7-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-7-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-7-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-7-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-7-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-7-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-7-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-7-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-7-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-7-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-7-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-7-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-7-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-7-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-7-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-7-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-7-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-7-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-7-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-7-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-7-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-7-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-7-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-7-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-7-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-7-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-7-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-7-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-7-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-7-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-7-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-7-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-7-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-7-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-7-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-7-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-7-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-7-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-7-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-7-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-7-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-7-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-7-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-7-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-7-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-7-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-7-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-7-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-7-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-7-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-7-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-7-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-7-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-7-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-7-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-7-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-7-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-7-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-7-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-7-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-7-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-7-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-7-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-7-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-7-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-7-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-7-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-7-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-7-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-7-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-7-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-7-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-7-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-7-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-7-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-7-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-7-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-7-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-7-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-7-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-7-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-7-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-7-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-7-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-7-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-7-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-7-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-7-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-7-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-7-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-7-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-7-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-7-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-7-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-7-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-7-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-7-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-7-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-7-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-7-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-7-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-7-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-7-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-7-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-7-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-7-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-7-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-7-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-7-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-7-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-7-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-7-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-7-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-7-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-7-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-7-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-7-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-7-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-7-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-7-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-7-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-7-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-7-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-7-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-7-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-7-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-7-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-7-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-7-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-7-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-7-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-7-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-7-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-7-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-7-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-7-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-7-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-7-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-7-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-7-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-7-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-7-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-7-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-7-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-7-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-7-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-7-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-7-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-7-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-7-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-7-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-7-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-7-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-7-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-7-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-7-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-7-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-7-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-7-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-7-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-7-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-7-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-7-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-7-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-7-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-7-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-7-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-7-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-7-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-7-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-7-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-7-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-7-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-7-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-7-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-7-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-7-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-7-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-7-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-7-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-7-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-7-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-7-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-7-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-7-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-7-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-7-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-7-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-7-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-7-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-7-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-7-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-7-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-7-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-7-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-7-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-7-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-7-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-7-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-7-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-7-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-7-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-7-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-7-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-7-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-7-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-7-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-7-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-7-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-7-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-7-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-7-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-7-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-7-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-7-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-7-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-7-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-7-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-7-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-7-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-7-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-7-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-7-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-7-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-7-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-7-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-7-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-7-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-7-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-7-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-7-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-7-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-7-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-7-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-7-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-7-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-7-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-7-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-7-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-7-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-7-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-7-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-7-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-7-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-7-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-7-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-7-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-7-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-7-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-7-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-7-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-7-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-7-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-7-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-7-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-7-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-7-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-7-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-7-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-7-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-7-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-7-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-7-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L2-7-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L2-7-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L2-7-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L2-7-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L2-7-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L2-7-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L2-7-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L2-7-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L2-7-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L2-7-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L2-7-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L2-7-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L2-7-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L2-7-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L2-7-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L2-7-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L2-7-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L2-7-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L2-7-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L2-7-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L2-7-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L2-7-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L2-7-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L2-7-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L2-7-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L2-7-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L2-7-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L2-7-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L2-7-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L2-7-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L2-7-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L2-7-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L2-7-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L2-7-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L2-7-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L2-7-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L2-7-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L2-7-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-0-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-0-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-0-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-0-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-0-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-0-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-0-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-0-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-0-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-0-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-0-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-0-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-0-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-0-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-0-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-0-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-0-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-0-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-0-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-0-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-0-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-0-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-0-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-0-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-0-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-0-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-0-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-0-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-0-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-0-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-0-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-0-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-0-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-0-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-0-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-0-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-0-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-0-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-0-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-0-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-0-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-0-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-0-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-0-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-0-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-0-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-0-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-0-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-0-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-0-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-0-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-0-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-0-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-0-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-0-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-0-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-0-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-0-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-0-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-0-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-0-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-0-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-0-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-0-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-0-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-0-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-0-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-0-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-0-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-0-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-0-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-0-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-0-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-0-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-0-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-0-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-0-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-0-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-0-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-0-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-0-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-0-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-0-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-0-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-0-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-0-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-0-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-0-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-0-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-0-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-0-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-0-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-0-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-0-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-0-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-0-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-0-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-0-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-0-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-0-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-0-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-0-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-0-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-0-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-0-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-0-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-0-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-0-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-0-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-0-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-0-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-0-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-0-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-0-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-0-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-0-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-0-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-0-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-0-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-0-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-0-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-0-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-0-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-0-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-0-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-0-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-0-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-0-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-0-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-0-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-0-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-0-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-0-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-0-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-0-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-0-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-0-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-0-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-0-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-0-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-0-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-0-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-0-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-0-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-0-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-0-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-0-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-0-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-0-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-0-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-0-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-0-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-0-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-0-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-0-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-0-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-0-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-0-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-0-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-0-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-0-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-0-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-0-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-0-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-0-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-0-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-0-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-0-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-0-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-0-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-0-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-0-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-0-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-0-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-0-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-0-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-0-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-0-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-0-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-0-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-0-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-0-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-0-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-0-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-0-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-0-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-0-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-0-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-0-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-0-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-0-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-0-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-0-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-0-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-0-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-0-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-0-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-0-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-0-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-0-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-0-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-0-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-0-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-0-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-0-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-0-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-0-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-0-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-0-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-0-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-0-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-0-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-0-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-0-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-0-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-0-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-0-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-0-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-0-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-0-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-0-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-0-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-0-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-0-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-0-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-0-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-0-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-0-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-0-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-0-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-0-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-0-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-0-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-0-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-0-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-0-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-0-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-0-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-0-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-0-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-0-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-0-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-0-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-0-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-0-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-0-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-0-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-0-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-0-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-0-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-0-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-0-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-0-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-0-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-0-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-0-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-0-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-0-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-0-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-0-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-0-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-0-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-0-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-0-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-0-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-0-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-0-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-0-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-0-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-0-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-0-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-0-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-0-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-0-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-0-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-0-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-0-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-0-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-0-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-0-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-0-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-0-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-0-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-0-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-0-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-0-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-0-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-0-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-0-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-0-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-0-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-0-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-0-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-0-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-0-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-0-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-0-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-0-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-0-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-0-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-0-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-0-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-0-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-0-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-0-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-0-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-0-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-0-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-0-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-0-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-0-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-0-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-0-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-0-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-0-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-0-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-0-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-0-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-0-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-0-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-0-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-0-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-0-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-0-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-0-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-0-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-1-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-1-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-1-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-1-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-1-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-1-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-1-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-1-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-1-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-1-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-1-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-1-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-1-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-1-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-1-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-1-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-1-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-1-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-1-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-1-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-1-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-1-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-1-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-1-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-1-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-1-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-1-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-1-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-1-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-1-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-1-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-1-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-1-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-1-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-1-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-1-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-1-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-1-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-1-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-1-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-1-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-1-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-1-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-1-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-1-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-1-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-1-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-1-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-1-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-1-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-1-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-1-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-1-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-1-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-1-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-1-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-1-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-1-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-1-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-1-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-1-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-1-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-1-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-1-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-1-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-1-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-1-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-1-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-1-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-1-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-1-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-1-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-1-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-1-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-1-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-1-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-1-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-1-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-1-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-1-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-1-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-1-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-1-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-1-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-1-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-1-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-1-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-1-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-1-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-1-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-1-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-1-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-1-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-1-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-1-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-1-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-1-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-1-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-1-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-1-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-1-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-1-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-1-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-1-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-1-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-1-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-1-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-1-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-1-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-1-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-1-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-1-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-1-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-1-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-1-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-1-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-1-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-1-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-1-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-1-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-1-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-1-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-1-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-1-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-1-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-1-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-1-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-1-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-1-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-1-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-1-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-1-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-1-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-1-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-1-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-1-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-1-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-1-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-1-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-1-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-1-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-1-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-1-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-1-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-1-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-1-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-1-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-1-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-1-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-1-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-1-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-1-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-1-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-1-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-1-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-1-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-1-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-1-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-1-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-1-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-1-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-1-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-1-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-1-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-1-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-1-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-1-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-1-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-1-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-1-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-1-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-1-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-1-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-1-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-1-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-1-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-1-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-1-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-1-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-1-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-1-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-1-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-1-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-1-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-1-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-1-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-1-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-1-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-1-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-1-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-1-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-1-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-1-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-1-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-1-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-1-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-1-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-1-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-1-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-1-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-1-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-1-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-1-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-1-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-1-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-1-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-1-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-1-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-1-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-1-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-1-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-1-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-1-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-1-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-1-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-1-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-1-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-1-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-1-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-1-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-1-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-1-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-1-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-1-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-1-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-1-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-1-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-1-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-1-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-1-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-1-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-1-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-1-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-1-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-1-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-1-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-1-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-1-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-1-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-1-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-1-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-1-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-1-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-1-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-1-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-1-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-1-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-1-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-1-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-1-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-1-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-1-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-1-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-1-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-1-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-1-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-1-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-1-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-1-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-1-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-1-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-1-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-1-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-1-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-1-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-1-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-1-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-1-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-1-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-1-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-1-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-1-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-1-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-1-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-1-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-1-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-1-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-1-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-1-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-1-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-1-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-1-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-1-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-1-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-1-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-1-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-1-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-1-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-1-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-1-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-1-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-1-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-1-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-1-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-1-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-1-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-1-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-1-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-1-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-1-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-1-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-1-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-1-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-1-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-1-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-1-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-1-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-1-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-1-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-1-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-1-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-1-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-1-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-1-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-1-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-1-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-1-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-1-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-1-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-1-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-1-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-1-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-1-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-1-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-1-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-1-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-1-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-1-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-1-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-1-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-1-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-1-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-1-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-1-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-1-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-1-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-1-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-1-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-1-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-1-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-1-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-1-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-1-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-1-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-1-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-1-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-1-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-1-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-1-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-1-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-1-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-1-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-1-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-1-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-1-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-1-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-1-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-1-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-1-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-1-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-1-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-1-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-2-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-2-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-2-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-2-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-2-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-2-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-2-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-2-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-2-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-2-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-2-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-2-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-2-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-2-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-2-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-2-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-2-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-2-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-2-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-2-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-2-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-2-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-2-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-2-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-2-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-2-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-2-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-2-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-2-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-2-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-2-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-2-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-2-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-2-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-2-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-2-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-2-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-2-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-2-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-2-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-2-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-2-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-2-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-2-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-2-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-2-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-2-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-2-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-2-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-2-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-2-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-2-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-2-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-2-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-2-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-2-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-2-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-2-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-2-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-2-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-2-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-2-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-2-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-2-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-2-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-2-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-2-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-2-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-2-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-2-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-2-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-2-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-2-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-2-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-2-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-2-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-2-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-2-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-2-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-2-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-2-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-2-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-2-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-2-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-2-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-2-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-2-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-2-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-2-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-2-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-2-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-2-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-2-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-2-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-2-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-2-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-2-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-2-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-2-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-2-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-2-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-2-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-2-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-2-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-2-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-2-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-2-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-2-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-2-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-2-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-2-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-2-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-2-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-2-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-2-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-2-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-2-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-2-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-2-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-2-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-2-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-2-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-2-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-2-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-2-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-2-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-2-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-2-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-2-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-2-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-2-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-2-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-2-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-2-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-2-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-2-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-2-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-2-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-2-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-2-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-2-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-2-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-2-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-2-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-2-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-2-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-2-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-2-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-2-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-2-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-2-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-2-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-2-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-2-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-2-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-2-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-2-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-2-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-2-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-2-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-2-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-2-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-2-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-2-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-2-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-2-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-2-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-2-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-2-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-2-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-2-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-2-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-2-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-2-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-2-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-2-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-2-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-2-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-2-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-2-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-2-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-2-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-2-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-2-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-2-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-2-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-2-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-2-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-2-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-2-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-2-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-2-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-2-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-2-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-2-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-2-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-2-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-2-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-2-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-2-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-2-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-2-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-2-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-2-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-2-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-2-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-2-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-2-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-2-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-2-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-2-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-2-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-2-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-2-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-2-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-2-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-2-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-2-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-2-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-2-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-2-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-2-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-2-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-2-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-2-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-2-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-2-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-2-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-2-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-2-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-2-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-2-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-2-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-2-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-2-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-2-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-2-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-2-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-2-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-2-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-2-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-2-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-2-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-2-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-2-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-2-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-2-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-2-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-2-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-2-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-2-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-2-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-2-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-2-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-2-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-2-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-2-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-2-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-2-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-2-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-2-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-2-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-2-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-2-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-2-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-2-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-2-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-2-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-2-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-2-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-2-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-2-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-2-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-2-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-2-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-2-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-2-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-2-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-2-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-2-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-2-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-2-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-2-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-2-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-2-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-2-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-2-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-2-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-2-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-2-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-2-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-2-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-2-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-2-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-2-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-2-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-2-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-2-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-2-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-2-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-2-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-2-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-2-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-2-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-2-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-2-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-2-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-2-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-2-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-2-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-2-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-2-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-2-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-2-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-2-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-2-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-2-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-2-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-2-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-2-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-2-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-2-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-2-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-2-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-2-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-2-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-2-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-2-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-2-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-2-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-2-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-2-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-2-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-2-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-2-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-2-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-2-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-2-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-2-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-2-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-2-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-2-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-2-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-2-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-2-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-2-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-2-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-2-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-2-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-2-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-2-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-2-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-2-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-2-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-2-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-2-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-2-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-2-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-2-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-2-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-2-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-2-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-3-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-3-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-3-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-3-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-3-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-3-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-3-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-3-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-3-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-3-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-3-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-3-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-3-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-3-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-3-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-3-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-3-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-3-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-3-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-3-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-3-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-3-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-3-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-3-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-3-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-3-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-3-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-3-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-3-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-3-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-3-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-3-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-3-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-3-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-3-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-3-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-3-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-3-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-3-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-3-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-3-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-3-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-3-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-3-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-3-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-3-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-3-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-3-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-3-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-3-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-3-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-3-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-3-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-3-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-3-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-3-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-3-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-3-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-3-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-3-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-3-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-3-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-3-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-3-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-3-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-3-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-3-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-3-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-3-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-3-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-3-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-3-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-3-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-3-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-3-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-3-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-3-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-3-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-3-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-3-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-3-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-3-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-3-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-3-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-3-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-3-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-3-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-3-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-3-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-3-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-3-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-3-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-3-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-3-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-3-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-3-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-3-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-3-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-3-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-3-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-3-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-3-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-3-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-3-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-3-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-3-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-3-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-3-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-3-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-3-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-3-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-3-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-3-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-3-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-3-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-3-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-3-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-3-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-3-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-3-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-3-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-3-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-3-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-3-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-3-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-3-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-3-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-3-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-3-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-3-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-3-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-3-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-3-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-3-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-3-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-3-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-3-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-3-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-3-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-3-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-3-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-3-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-3-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-3-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-3-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-3-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-3-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-3-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-3-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-3-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-3-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-3-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-3-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-3-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-3-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-3-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-3-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-3-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-3-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-3-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-3-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-3-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-3-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-3-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-3-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-3-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-3-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-3-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-3-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-3-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-3-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-3-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-3-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-3-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-3-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-3-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-3-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-3-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-3-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-3-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-3-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-3-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-3-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-3-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-3-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-3-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-3-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-3-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-3-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-3-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-3-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-3-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-3-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-3-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-3-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-3-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-3-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-3-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-3-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-3-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-3-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-3-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-3-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-3-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-3-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-3-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-3-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-3-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-3-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-3-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-3-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-3-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-3-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-3-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-3-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-3-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-3-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-3-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-3-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-3-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-3-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-3-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-3-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-3-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-3-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-3-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-3-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-3-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-3-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-3-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-3-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-3-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-3-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-3-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-3-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-3-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-3-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-3-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-3-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-3-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-3-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-3-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-3-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-3-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-3-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-3-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-3-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-3-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-3-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-3-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-3-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-3-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-3-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-3-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-3-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-3-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-3-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-3-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-3-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-3-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-3-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-3-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-3-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-3-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-3-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-3-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-3-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-3-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-3-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-3-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-3-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-3-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-3-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-3-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-3-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-3-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-3-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-3-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-3-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-3-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-3-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-3-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-3-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-3-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-3-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-3-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-3-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-3-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-3-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-3-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-3-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-3-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-3-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-3-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-3-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-3-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-3-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-3-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-3-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-3-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-3-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-3-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-3-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-3-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-3-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-3-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-3-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-3-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-3-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-3-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-3-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-3-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-3-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-3-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-3-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-3-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-3-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-3-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-3-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-3-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-3-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-3-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-3-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-3-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-3-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-3-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-3-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-3-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-3-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-3-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-3-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-3-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-3-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-3-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-3-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-3-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-3-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-3-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-3-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-3-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-3-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-3-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-3-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-3-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-3-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-3-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-3-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-3-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-3-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-3-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-3-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-3-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-3-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-3-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-3-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-3-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-3-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-3-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-3-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-3-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-3-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-3-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-4-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-4-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-4-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-4-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-4-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-4-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-4-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-4-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-4-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-4-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-4-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-4-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-4-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-4-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-4-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-4-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-4-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-4-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-4-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-4-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-4-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-4-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-4-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-4-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-4-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-4-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-4-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-4-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-4-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-4-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-4-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-4-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-4-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-4-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-4-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-4-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-4-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-4-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-4-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-4-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-4-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-4-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-4-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-4-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-4-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-4-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-4-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-4-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-4-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-4-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-4-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-4-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-4-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-4-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-4-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-4-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-4-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-4-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-4-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-4-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-4-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-4-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-4-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-4-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-4-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-4-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-4-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-4-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-4-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-4-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-4-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-4-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-4-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-4-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-4-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-4-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-4-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-4-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-4-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-4-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-4-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-4-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-4-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-4-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-4-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-4-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-4-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-4-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-4-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-4-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-4-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-4-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-4-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-4-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-4-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-4-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-4-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-4-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-4-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-4-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-4-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-4-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-4-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-4-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-4-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-4-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-4-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-4-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-4-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-4-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-4-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-4-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-4-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-4-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-4-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-4-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-4-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-4-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-4-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-4-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-4-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-4-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-4-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-4-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-4-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-4-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-4-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-4-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-4-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-4-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-4-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-4-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-4-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-4-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-4-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-4-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-4-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-4-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-4-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-4-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-4-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-4-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-4-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-4-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-4-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-4-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-4-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-4-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-4-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-4-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-4-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-4-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-4-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-4-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-4-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-4-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-4-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-4-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-4-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-4-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-4-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-4-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-4-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-4-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-4-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-4-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-4-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-4-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-4-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-4-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-4-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-4-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-4-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-4-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-4-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-4-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-4-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-4-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-4-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-4-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-4-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-4-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-4-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-4-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-4-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-4-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-4-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-4-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-4-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-4-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-4-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-4-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-4-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-4-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-4-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-4-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-4-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-4-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-4-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-4-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-4-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-4-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-4-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-4-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-4-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-4-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-4-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-4-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-4-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-4-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-4-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-4-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-4-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-4-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-4-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-4-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-4-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-4-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-4-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-4-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-4-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-4-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-4-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-4-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-4-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-4-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-4-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-4-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-4-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-4-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-4-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-4-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-4-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-4-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-4-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-4-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-4-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-4-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-4-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-4-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-4-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-4-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-4-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-4-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-4-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-4-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-4-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-4-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-4-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-4-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-4-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-4-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-4-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-4-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-4-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-4-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-4-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-4-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-4-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-4-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-4-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-4-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-4-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-4-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-4-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-4-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-4-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-4-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-4-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-4-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-4-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-4-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-4-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-4-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-4-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-4-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-4-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-4-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-4-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-4-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-4-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-4-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-4-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-4-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-4-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-4-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-4-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-4-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-4-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-4-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-4-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-4-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-4-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-4-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-4-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-4-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-4-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-4-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-4-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-4-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-4-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-4-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-4-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-4-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-4-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-4-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-4-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-4-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-4-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-4-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-4-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-4-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-4-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-4-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-4-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-4-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-4-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-4-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-4-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-4-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-4-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-4-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-4-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-4-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-4-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-4-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-4-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-4-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-4-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-4-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-4-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-4-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-4-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-4-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-4-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-4-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-4-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-4-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-4-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-4-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-4-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-4-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-4-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-4-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-4-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-4-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-4-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-4-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-4-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-4-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-4-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-4-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-4-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-4-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-4-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-4-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-4-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-4-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-4-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-4-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-4-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-4-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-5-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-5-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-5-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-5-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-5-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-5-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-5-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-5-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-5-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-5-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-5-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-5-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-5-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-5-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-5-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-5-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-5-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-5-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-5-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-5-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-5-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-5-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-5-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-5-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-5-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-5-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-5-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-5-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-5-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-5-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-5-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-5-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-5-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-5-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-5-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-5-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-5-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-5-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-5-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-5-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-5-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-5-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-5-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-5-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-5-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-5-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-5-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-5-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-5-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-5-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-5-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-5-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-5-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-5-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-5-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-5-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-5-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-5-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-5-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-5-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-5-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-5-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-5-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-5-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-5-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-5-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-5-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-5-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-5-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-5-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-5-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-5-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-5-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-5-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-5-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-5-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-5-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-5-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-5-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-5-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-5-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-5-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-5-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-5-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-5-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-5-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-5-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-5-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-5-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-5-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-5-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-5-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-5-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-5-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-5-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-5-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-5-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-5-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-5-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-5-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-5-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-5-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-5-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-5-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-5-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-5-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-5-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-5-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-5-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-5-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-5-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-5-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-5-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-5-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-5-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-5-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-5-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-5-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-5-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-5-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-5-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-5-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-5-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-5-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-5-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-5-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-5-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-5-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-5-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-5-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-5-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-5-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-5-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-5-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-5-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-5-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-5-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-5-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-5-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-5-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-5-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-5-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-5-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-5-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-5-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-5-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-5-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-5-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-5-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-5-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-5-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-5-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-5-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-5-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-5-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-5-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-5-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-5-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-5-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-5-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-5-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-5-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-5-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-5-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-5-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-5-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-5-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-5-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-5-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-5-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-5-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-5-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-5-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-5-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-5-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-5-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-5-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-5-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-5-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-5-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-5-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-5-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-5-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-5-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-5-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-5-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-5-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-5-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-5-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-5-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-5-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-5-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-5-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-5-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-5-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-5-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-5-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-5-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-5-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-5-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-5-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-5-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-5-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-5-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-5-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-5-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-5-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-5-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-5-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-5-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-5-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-5-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-5-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-5-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-5-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-5-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-5-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-5-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-5-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-5-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-5-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-5-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-5-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-5-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-5-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-5-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-5-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-5-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-5-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-5-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-5-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-5-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-5-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-5-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-5-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-5-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-5-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-5-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-5-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-5-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-5-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-5-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-5-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-5-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-5-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-5-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-5-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-5-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-5-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-5-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-5-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-5-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-5-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-5-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-5-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-5-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-5-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-5-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-5-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-5-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-5-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-5-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-5-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-5-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-5-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-5-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-5-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-5-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-5-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-5-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-5-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-5-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-5-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-5-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-5-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-5-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-5-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-5-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-5-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-5-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-5-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-5-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-5-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-5-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-5-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-5-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-5-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-5-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-5-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-5-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-5-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-5-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-5-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-5-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-5-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-5-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-5-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-5-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-5-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-5-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-5-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-5-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-5-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-5-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-5-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-5-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-5-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-5-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-5-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-5-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-5-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-5-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-5-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-5-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-5-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-5-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-5-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-5-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-5-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-5-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-5-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-5-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-5-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-5-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-5-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-5-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-5-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-5-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-5-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-5-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-5-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-5-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-5-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-5-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-5-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-5-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-5-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-5-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-5-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-5-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-5-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-5-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-5-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-5-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-5-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-5-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-5-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-5-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-5-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-5-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-5-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-5-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-5-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-5-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-5-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-5-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-5-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-5-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-5-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-5-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-5-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-5-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-6-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-6-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-6-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-6-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-6-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-6-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-6-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-6-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-6-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-6-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-6-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-6-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-6-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-6-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-6-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-6-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-6-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-6-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-6-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-6-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-6-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-6-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-6-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-6-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-6-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-6-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-6-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-6-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-6-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-6-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-6-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-6-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-6-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-6-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-6-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-6-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-6-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-6-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-6-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-6-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-6-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-6-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-6-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-6-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-6-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-6-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-6-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-6-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-6-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-6-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-6-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-6-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-6-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-6-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-6-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-6-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-6-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-6-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-6-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-6-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-6-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-6-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-6-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-6-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-6-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-6-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-6-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-6-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-6-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-6-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-6-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-6-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-6-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-6-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-6-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-6-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-6-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-6-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-6-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-6-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-6-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-6-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-6-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-6-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-6-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-6-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-6-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-6-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-6-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-6-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-6-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-6-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-6-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-6-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-6-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-6-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-6-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-6-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-6-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-6-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-6-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-6-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-6-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-6-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-6-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-6-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-6-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-6-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-6-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-6-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-6-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-6-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-6-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-6-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-6-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-6-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-6-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-6-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-6-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-6-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-6-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-6-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-6-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-6-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-6-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-6-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-6-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-6-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-6-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-6-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-6-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-6-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-6-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-6-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-6-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-6-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-6-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-6-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-6-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-6-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-6-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-6-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-6-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-6-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-6-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-6-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-6-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-6-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-6-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-6-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-6-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-6-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-6-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-6-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-6-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-6-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-6-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-6-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-6-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-6-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-6-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-6-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-6-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-6-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-6-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-6-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-6-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-6-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-6-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-6-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-6-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-6-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-6-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-6-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-6-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-6-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-6-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-6-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-6-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-6-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-6-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-6-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-6-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-6-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-6-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-6-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-6-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-6-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-6-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-6-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-6-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-6-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-6-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-6-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-6-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-6-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-6-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-6-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-6-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-6-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-6-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-6-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-6-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-6-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-6-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-6-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-6-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-6-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-6-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-6-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-6-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-6-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-6-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-6-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-6-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-6-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-6-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-6-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-6-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-6-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-6-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-6-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-6-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-6-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-6-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-6-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-6-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-6-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-6-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-6-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-6-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-6-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-6-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-6-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-6-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-6-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-6-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-6-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-6-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-6-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-6-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-6-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-6-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-6-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-6-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-6-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-6-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-6-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-6-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-6-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-6-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-6-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-6-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-6-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-6-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-6-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-6-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-6-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-6-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-6-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-6-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-6-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-6-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-6-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-6-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-6-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-6-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-6-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-6-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-6-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-6-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-6-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-6-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-6-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-6-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-6-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-6-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-6-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-6-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-6-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-6-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-6-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-6-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-6-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-6-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-6-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-6-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-6-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-6-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-6-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-6-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-6-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-6-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-6-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-6-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-6-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-6-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-6-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-6-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-6-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-6-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-6-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-6-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-6-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-6-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-6-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-6-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-6-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-6-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-6-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-6-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-6-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-6-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-6-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-6-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-6-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-6-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-6-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-6-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-6-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-6-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-6-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-6-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-6-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-6-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-6-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-6-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-6-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-6-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-6-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-6-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-6-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-6-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-6-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-6-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-6-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-6-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-6-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-6-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-6-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-6-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-6-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-6-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-6-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-6-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-6-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-6-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-6-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-6-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-6-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-6-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-6-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-6-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-6-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-6-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-6-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-6-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-6-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-6-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-6-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-6-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-6-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-7-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-7-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-7-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-7-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-7-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-7-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-7-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-7-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-7-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-7-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-7-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-7-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-7-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-7-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-7-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-7-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-7-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-7-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-7-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-7-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-7-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-7-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-7-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-7-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-7-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-7-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-7-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-7-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-7-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-7-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-7-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-7-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-7-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-7-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-7-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-7-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-7-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-7-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-7-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-7-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-7-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-7-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-7-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-7-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-7-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-7-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-7-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-7-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-7-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-7-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-7-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-7-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-7-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-7-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-7-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-7-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-7-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-7-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-7-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-7-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-7-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-7-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-7-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-7-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-7-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-7-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-7-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-7-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-7-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-7-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-7-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-7-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-7-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-7-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-7-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-7-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-7-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-7-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-7-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-7-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-7-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-7-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-7-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-7-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-7-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-7-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-7-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-7-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-7-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-7-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-7-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-7-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-7-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-7-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-7-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-7-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-7-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-7-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-7-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-7-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-7-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-7-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-7-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-7-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-7-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-7-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-7-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-7-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-7-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-7-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-7-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-7-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-7-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-7-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-7-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-7-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-7-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-7-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-7-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-7-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-7-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-7-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-7-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-7-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-7-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-7-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-7-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-7-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-7-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-7-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-7-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-7-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-7-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-7-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-7-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-7-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-7-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-7-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-7-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-7-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-7-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-7-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-7-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-7-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-7-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-7-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-7-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-7-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-7-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-7-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-7-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-7-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-7-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-7-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-7-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-7-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-7-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-7-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-7-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-7-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-7-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-7-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-7-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-7-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-7-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-7-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-7-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-7-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-7-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-7-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-7-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-7-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-7-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-7-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-7-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-7-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-7-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-7-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-7-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-7-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-7-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-7-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-7-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-7-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-7-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-7-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-7-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-7-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-7-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-7-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-7-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-7-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-7-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-7-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-7-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-7-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-7-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-7-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-7-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-7-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-7-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-7-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-7-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-7-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-7-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-7-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-7-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-7-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-7-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-7-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-7-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-7-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-7-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-7-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-7-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-7-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-7-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-7-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-7-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-7-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-7-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-7-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-7-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-7-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-7-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-7-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-7-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-7-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-7-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-7-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-7-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-7-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-7-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-7-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-7-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-7-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-7-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-7-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-7-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-7-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-7-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-7-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-7-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-7-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-7-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-7-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-7-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-7-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-7-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-7-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-7-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-7-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-7-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-7-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-7-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-7-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-7-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-7-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-7-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-7-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-7-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-7-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-7-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-7-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-7-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-7-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-7-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-7-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-7-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-7-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-7-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-7-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-7-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-7-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-7-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-7-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-7-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-7-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-7-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-7-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-7-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-7-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-7-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-7-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-7-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-7-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-7-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-7-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L3-7-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L3-7-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L3-7-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L3-7-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L3-7-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L3-7-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L3-7-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L3-7-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L3-7-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L3-7-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L3-7-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L3-7-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L3-7-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L3-7-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L3-7-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L3-7-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L3-7-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L3-7-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L3-7-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L3-7-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L3-7-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L3-7-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L3-7-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L3-7-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L3-7-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L3-7-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L3-7-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L3-7-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L3-7-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L3-7-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L3-7-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L3-7-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L3-7-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L3-7-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L3-7-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L3-7-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L3-7-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L3-7-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-0-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-0-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-0-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-0-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-0-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-0-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-0-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-0-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-0-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-0-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-0-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-0-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-0-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-0-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-0-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-0-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-0-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-0-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-0-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-0-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-0-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-0-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-0-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-0-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-0-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-0-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-0-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-0-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-0-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-0-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-0-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-0-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-0-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-0-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-0-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-0-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-0-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-0-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-0-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-0-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-0-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-0-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-0-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-0-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-0-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-0-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-0-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-0-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-0-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-0-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-0-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-0-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-0-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-0-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-0-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-0-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-0-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-0-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-0-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-0-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-0-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-0-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-0-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-0-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-0-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-0-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-0-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-0-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-0-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-0-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-0-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-0-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-0-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-0-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-0-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-0-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-0-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-0-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-0-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-0-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-0-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-0-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-0-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-0-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-0-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-0-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-0-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-0-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-0-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-0-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-0-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-0-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-0-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-0-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-0-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-0-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-0-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-0-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-0-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-0-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-0-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-0-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-0-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-0-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-0-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-0-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-0-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-0-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-0-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-0-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-0-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-0-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-0-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-0-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-0-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-0-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-0-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-0-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-0-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-0-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-0-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-0-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-0-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-0-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-0-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-0-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-0-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-0-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-0-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-0-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-0-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-0-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-0-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-0-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-0-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-0-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-0-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-0-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-0-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-0-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-0-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-0-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-0-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-0-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-0-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-0-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-0-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-0-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-0-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-0-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-0-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-0-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-0-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-0-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-0-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-0-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-0-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-0-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-0-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-0-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-0-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-0-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-0-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-0-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-0-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-0-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-0-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-0-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-0-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-0-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-0-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-0-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-0-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-0-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-0-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-0-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-0-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-0-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-0-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-0-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-0-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-0-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-0-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-0-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-0-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-0-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-0-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-0-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-0-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-0-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-0-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-0-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-0-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-0-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-0-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-0-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-0-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-0-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-0-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-0-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-0-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-0-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-0-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-0-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-0-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-0-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-0-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-0-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-0-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-0-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-0-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-0-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-0-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-0-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-0-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-0-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-0-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-0-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-0-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-0-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-0-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-0-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-0-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-0-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-0-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-0-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-0-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-0-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-0-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-0-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-0-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-0-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-0-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-0-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-0-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-0-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-0-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-0-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-0-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-0-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-0-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-0-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-0-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-0-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-0-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-0-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-0-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-0-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-0-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-0-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-0-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-0-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-0-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-0-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-0-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-0-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-0-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-0-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-0-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-0-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-0-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-0-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-0-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-0-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-0-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-0-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-0-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-0-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-0-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-0-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-0-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-0-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-0-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-0-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-0-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-0-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-0-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-0-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-0-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-0-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-0-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-0-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-0-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-0-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-0-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-0-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-0-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-0-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-0-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-0-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-0-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-0-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-0-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-0-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-0-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-0-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-0-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-0-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-0-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-0-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-0-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-0-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-0-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-0-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-0-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-0-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-0-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-0-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-0-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-0-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-0-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-0-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-0-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-0-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-0-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-0-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-0-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-0-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-0-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-0-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-0-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-0-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-0-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-0-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-0-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-0-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-1-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-1-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-1-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-1-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-1-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-1-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-1-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-1-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-1-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-1-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-1-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-1-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-1-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-1-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-1-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-1-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-1-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-1-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-1-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-1-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-1-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-1-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-1-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-1-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-1-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-1-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-1-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-1-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-1-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-1-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-1-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-1-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-1-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-1-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-1-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-1-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-1-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-1-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-1-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-1-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-1-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-1-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-1-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-1-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-1-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-1-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-1-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-1-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-1-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-1-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-1-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-1-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-1-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-1-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-1-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-1-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-1-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-1-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-1-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-1-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-1-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-1-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-1-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-1-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-1-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-1-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-1-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-1-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-1-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-1-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-1-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-1-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-1-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-1-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-1-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-1-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-1-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-1-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-1-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-1-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-1-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-1-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-1-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-1-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-1-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-1-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-1-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-1-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-1-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-1-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-1-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-1-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-1-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-1-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-1-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-1-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-1-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-1-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-1-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-1-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-1-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-1-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-1-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-1-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-1-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-1-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-1-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-1-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-1-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-1-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-1-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-1-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-1-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-1-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-1-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-1-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-1-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-1-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-1-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-1-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-1-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-1-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-1-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-1-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-1-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-1-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-1-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-1-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-1-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-1-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-1-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-1-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-1-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-1-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-1-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-1-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-1-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-1-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-1-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-1-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-1-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-1-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-1-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-1-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-1-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-1-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-1-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-1-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-1-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-1-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-1-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-1-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-1-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-1-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-1-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-1-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-1-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-1-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-1-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-1-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-1-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-1-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-1-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-1-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-1-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-1-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-1-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-1-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-1-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-1-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-1-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-1-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-1-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-1-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-1-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-1-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-1-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-1-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-1-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-1-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-1-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-1-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-1-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-1-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-1-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-1-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-1-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-1-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-1-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-1-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-1-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-1-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-1-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-1-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-1-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-1-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-1-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-1-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-1-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-1-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-1-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-1-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-1-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-1-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-1-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-1-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-1-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-1-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-1-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-1-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-1-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-1-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-1-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-1-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-1-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-1-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-1-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-1-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-1-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-1-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-1-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-1-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-1-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-1-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-1-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-1-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-1-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-1-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-1-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-1-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-1-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-1-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-1-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-1-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-1-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-1-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-1-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-1-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-1-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-1-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-1-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-1-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-1-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-1-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-1-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-1-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-1-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-1-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-1-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-1-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-1-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-1-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-1-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-1-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-1-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-1-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-1-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-1-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-1-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-1-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-1-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-1-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-1-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-1-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-1-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-1-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-1-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-1-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-1-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-1-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-1-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-1-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-1-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-1-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-1-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-1-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-1-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-1-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-1-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-1-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-1-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-1-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-1-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-1-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-1-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-1-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-1-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-1-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-1-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-1-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-1-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-1-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-1-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-1-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-1-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-1-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-1-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-1-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-1-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-1-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-1-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-1-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-1-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-1-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-1-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-1-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-1-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-1-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-1-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-1-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-1-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-1-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-1-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-1-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-1-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-1-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-1-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-1-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-1-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-1-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-1-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-1-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-1-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-1-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-1-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-1-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-1-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-1-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-1-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-1-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-1-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-1-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-1-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-1-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-1-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-1-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-1-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-1-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-1-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-1-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-1-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-1-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-1-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-1-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-1-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-1-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-1-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-1-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-1-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-1-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-1-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-1-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-1-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-1-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-1-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-1-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-1-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-1-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-1-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-1-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-1-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-1-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-2-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-2-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-2-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-2-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-2-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-2-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-2-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-2-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-2-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-2-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-2-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-2-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-2-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-2-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-2-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-2-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-2-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-2-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-2-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-2-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-2-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-2-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-2-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-2-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-2-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-2-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-2-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-2-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-2-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-2-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-2-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-2-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-2-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-2-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-2-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-2-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-2-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-2-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-2-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-2-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-2-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-2-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-2-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-2-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-2-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-2-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-2-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-2-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-2-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-2-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-2-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-2-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-2-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-2-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-2-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-2-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-2-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-2-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-2-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-2-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-2-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-2-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-2-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-2-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-2-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-2-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-2-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-2-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-2-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-2-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-2-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-2-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-2-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-2-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-2-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-2-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-2-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-2-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-2-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-2-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-2-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-2-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-2-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-2-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-2-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-2-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-2-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-2-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-2-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-2-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-2-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-2-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-2-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-2-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-2-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-2-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-2-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-2-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-2-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-2-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-2-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-2-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-2-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-2-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-2-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-2-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-2-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-2-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-2-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-2-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-2-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-2-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-2-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-2-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-2-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-2-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-2-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-2-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-2-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-2-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-2-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-2-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-2-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-2-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-2-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-2-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-2-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-2-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-2-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-2-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-2-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-2-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-2-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-2-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-2-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-2-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-2-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-2-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-2-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-2-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-2-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-2-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-2-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-2-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-2-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-2-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-2-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-2-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-2-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-2-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-2-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-2-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-2-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-2-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-2-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-2-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-2-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-2-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-2-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-2-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-2-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-2-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-2-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-2-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-2-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-2-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-2-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-2-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-2-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-2-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-2-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-2-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-2-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-2-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-2-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-2-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-2-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-2-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-2-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-2-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-2-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-2-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-2-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-2-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-2-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-2-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-2-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-2-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-2-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-2-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-2-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-2-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-2-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-2-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-2-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-2-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-2-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-2-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-2-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-2-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-2-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-2-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-2-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-2-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-2-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-2-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-2-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-2-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-2-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-2-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-2-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-2-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-2-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-2-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-2-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-2-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-2-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-2-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-2-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-2-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-2-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-2-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-2-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-2-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-2-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-2-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-2-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-2-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-2-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-2-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-2-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-2-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-2-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-2-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-2-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-2-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-2-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-2-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-2-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-2-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-2-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-2-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-2-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-2-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-2-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-2-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-2-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-2-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-2-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-2-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-2-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-2-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-2-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-2-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-2-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-2-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-2-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-2-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-2-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-2-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-2-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-2-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-2-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-2-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-2-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-2-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-2-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-2-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-2-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-2-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-2-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-2-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-2-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-2-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-2-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-2-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-2-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-2-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-2-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-2-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-2-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-2-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-2-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-2-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-2-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-2-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-2-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-2-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-2-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-2-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-2-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-2-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-2-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-2-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-2-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-2-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-2-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-2-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-2-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-2-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-2-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-2-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-2-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-2-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-2-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-2-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-2-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-2-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-2-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-2-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-2-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-2-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-2-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-2-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-2-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-2-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-2-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-2-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-2-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-2-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-2-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-2-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-2-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-2-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-2-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-2-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-2-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-2-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-2-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-2-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-2-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-2-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-2-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-2-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-2-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-2-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-2-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-2-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-2-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-2-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-2-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-2-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-2-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-2-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-2-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-2-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-2-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-2-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-2-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-2-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-2-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-2-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-2-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-2-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-2-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-2-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-2-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-2-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-2-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-2-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-2-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-2-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-3-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-3-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-3-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-3-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-3-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-3-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-3-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-3-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-3-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-3-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-3-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-3-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-3-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-3-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-3-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-3-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-3-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-3-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-3-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-3-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-3-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-3-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-3-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-3-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-3-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-3-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-3-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-3-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-3-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-3-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-3-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-3-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-3-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-3-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-3-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-3-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-3-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-3-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-3-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-3-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-3-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-3-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-3-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-3-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-3-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-3-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-3-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-3-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-3-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-3-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-3-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-3-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-3-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-3-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-3-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-3-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-3-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-3-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-3-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-3-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-3-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-3-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-3-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-3-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-3-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-3-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-3-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-3-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-3-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-3-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-3-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-3-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-3-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-3-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-3-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-3-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-3-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-3-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-3-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-3-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-3-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-3-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-3-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-3-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-3-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-3-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-3-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-3-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-3-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-3-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-3-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-3-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-3-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-3-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-3-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-3-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-3-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-3-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-3-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-3-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-3-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-3-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-3-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-3-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-3-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-3-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-3-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-3-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-3-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-3-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-3-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-3-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-3-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-3-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-3-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-3-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-3-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-3-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-3-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-3-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-3-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-3-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-3-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-3-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-3-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-3-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-3-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-3-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-3-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-3-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-3-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-3-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-3-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-3-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-3-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-3-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-3-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-3-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-3-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-3-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-3-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-3-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-3-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-3-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-3-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-3-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-3-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-3-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-3-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-3-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-3-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-3-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-3-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-3-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-3-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-3-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-3-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-3-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-3-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-3-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-3-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-3-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-3-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-3-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-3-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-3-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-3-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-3-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-3-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-3-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-3-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-3-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-3-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-3-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-3-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-3-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-3-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-3-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-3-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-3-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-3-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-3-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-3-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-3-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-3-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-3-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-3-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-3-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-3-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-3-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-3-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-3-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-3-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-3-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-3-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-3-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-3-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-3-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-3-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-3-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-3-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-3-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-3-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-3-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-3-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-3-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-3-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-3-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-3-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-3-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-3-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-3-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-3-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-3-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-3-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-3-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-3-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-3-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-3-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-3-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-3-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-3-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-3-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-3-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-3-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-3-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-3-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-3-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-3-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-3-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-3-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-3-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-3-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-3-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-3-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-3-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-3-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-3-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-3-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-3-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-3-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-3-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-3-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-3-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-3-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-3-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-3-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-3-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-3-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-3-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-3-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-3-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-3-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-3-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-3-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-3-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-3-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-3-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-3-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-3-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-3-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-3-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-3-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-3-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-3-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-3-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-3-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-3-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-3-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-3-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-3-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-3-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-3-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-3-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-3-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-3-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-3-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-3-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-3-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-3-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-3-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-3-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-3-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-3-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-3-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-3-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-3-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-3-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-3-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-3-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-3-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-3-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-3-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-3-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-3-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-3-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-3-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-3-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-3-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-3-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-3-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-3-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-3-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-3-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-3-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-3-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-3-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-3-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-3-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-3-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-3-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-3-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-3-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-3-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-3-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-3-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-3-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-3-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-3-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-3-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-3-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-3-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-3-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-3-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-3-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-3-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-3-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-3-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-3-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-3-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-3-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-3-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-3-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-3-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-3-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-3-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-3-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-3-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-3-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-3-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-3-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-3-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-3-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-3-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-3-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-3-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-3-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-3-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-3-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-3-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-3-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-3-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-3-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-3-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-3-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-3-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-3-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-3-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-3-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-3-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-3-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-3-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-4-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-4-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-4-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-4-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-4-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-4-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-4-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-4-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-4-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-4-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-4-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-4-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-4-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-4-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-4-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-4-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-4-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-4-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-4-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-4-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-4-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-4-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-4-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-4-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-4-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-4-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-4-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-4-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-4-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-4-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-4-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-4-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-4-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-4-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-4-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-4-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-4-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-4-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-4-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-4-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-4-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-4-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-4-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-4-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-4-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-4-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-4-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-4-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-4-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-4-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-4-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-4-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-4-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-4-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-4-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-4-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-4-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-4-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-4-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-4-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-4-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-4-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-4-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-4-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-4-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-4-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-4-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-4-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-4-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-4-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-4-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-4-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-4-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-4-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-4-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-4-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-4-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-4-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-4-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-4-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-4-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-4-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-4-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-4-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-4-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-4-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-4-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-4-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-4-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-4-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-4-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-4-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-4-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-4-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-4-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-4-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-4-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-4-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-4-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-4-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-4-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-4-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-4-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-4-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-4-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-4-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-4-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-4-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-4-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-4-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-4-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-4-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-4-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-4-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-4-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-4-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-4-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-4-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-4-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-4-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-4-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-4-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-4-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-4-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-4-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-4-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-4-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-4-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-4-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-4-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-4-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-4-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-4-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-4-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-4-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-4-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-4-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-4-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-4-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-4-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-4-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-4-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-4-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-4-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-4-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-4-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-4-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-4-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-4-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-4-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-4-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-4-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-4-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-4-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-4-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-4-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-4-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-4-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-4-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-4-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-4-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-4-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-4-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-4-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-4-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-4-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-4-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-4-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-4-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-4-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-4-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-4-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-4-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-4-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-4-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-4-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-4-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-4-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-4-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-4-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-4-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-4-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-4-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-4-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-4-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-4-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-4-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-4-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-4-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-4-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-4-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-4-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-4-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-4-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-4-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-4-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-4-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-4-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-4-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-4-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-4-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-4-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-4-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-4-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-4-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-4-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-4-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-4-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-4-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-4-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-4-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-4-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-4-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-4-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-4-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-4-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-4-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-4-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-4-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-4-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-4-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-4-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-4-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-4-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-4-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-4-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-4-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-4-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-4-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-4-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-4-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-4-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-4-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-4-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-4-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-4-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-4-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-4-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-4-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-4-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-4-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-4-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-4-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-4-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-4-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-4-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-4-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-4-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-4-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-4-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-4-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-4-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-4-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-4-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-4-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-4-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-4-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-4-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-4-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-4-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-4-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-4-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-4-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-4-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-4-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-4-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-4-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-4-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-4-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-4-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-4-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-4-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-4-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-4-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-4-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-4-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-4-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-4-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-4-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-4-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-4-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-4-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-4-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-4-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-4-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-4-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-4-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-4-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-4-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-4-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-4-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-4-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-4-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-4-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-4-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-4-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-4-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-4-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-4-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-4-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-4-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-4-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-4-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-4-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-4-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-4-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-4-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-4-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-4-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-4-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-4-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-4-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-4-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-4-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-4-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-4-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-4-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-4-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-4-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-4-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-4-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-4-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-4-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-4-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-4-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-4-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-4-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-4-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-4-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-4-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-4-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-4-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-4-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-4-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-4-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-4-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-4-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-4-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-4-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-4-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-4-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-4-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-4-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-4-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-4-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-4-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-4-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-4-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-4-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-4-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-4-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-4-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-4-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-4-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-4-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-4-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-4-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-4-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-4-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-4-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-4-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-4-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-5-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-5-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-5-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-5-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-5-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-5-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-5-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-5-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-5-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-5-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-5-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-5-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-5-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-5-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-5-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-5-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-5-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-5-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-5-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-5-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-5-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-5-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-5-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-5-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-5-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-5-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-5-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-5-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-5-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-5-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-5-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-5-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-5-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-5-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-5-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-5-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-5-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-5-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-5-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-5-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-5-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-5-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-5-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-5-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-5-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-5-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-5-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-5-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-5-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-5-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-5-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-5-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-5-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-5-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-5-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-5-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-5-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-5-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-5-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-5-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-5-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-5-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-5-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-5-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-5-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-5-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-5-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-5-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-5-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-5-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-5-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-5-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-5-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-5-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-5-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-5-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-5-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-5-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-5-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-5-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-5-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-5-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-5-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-5-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-5-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-5-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-5-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-5-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-5-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-5-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-5-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-5-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-5-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-5-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-5-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-5-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-5-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-5-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-5-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-5-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-5-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-5-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-5-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-5-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-5-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-5-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-5-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-5-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-5-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-5-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-5-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-5-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-5-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-5-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-5-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-5-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-5-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-5-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-5-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-5-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-5-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-5-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-5-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-5-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-5-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-5-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-5-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-5-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-5-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-5-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-5-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-5-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-5-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-5-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-5-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-5-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-5-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-5-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-5-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-5-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-5-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-5-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-5-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-5-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-5-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-5-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-5-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-5-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-5-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-5-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-5-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-5-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-5-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-5-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-5-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-5-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-5-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-5-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-5-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-5-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-5-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-5-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-5-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-5-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-5-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-5-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-5-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-5-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-5-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-5-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-5-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-5-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-5-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-5-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-5-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-5-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-5-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-5-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-5-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-5-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-5-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-5-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-5-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-5-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-5-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-5-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-5-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-5-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-5-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-5-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-5-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-5-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-5-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-5-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-5-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-5-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-5-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-5-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-5-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-5-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-5-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-5-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-5-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-5-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-5-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-5-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-5-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-5-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-5-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-5-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-5-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-5-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-5-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-5-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-5-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-5-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-5-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-5-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-5-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-5-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-5-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-5-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-5-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-5-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-5-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-5-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-5-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-5-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-5-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-5-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-5-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-5-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-5-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-5-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-5-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-5-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-5-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-5-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-5-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-5-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-5-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-5-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-5-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-5-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-5-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-5-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-5-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-5-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-5-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-5-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-5-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-5-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-5-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-5-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-5-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-5-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-5-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-5-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-5-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-5-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-5-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-5-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-5-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-5-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-5-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-5-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-5-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-5-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-5-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-5-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-5-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-5-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-5-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-5-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-5-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-5-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-5-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-5-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-5-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-5-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-5-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-5-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-5-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-5-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-5-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-5-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-5-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-5-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-5-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-5-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-5-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-5-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-5-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-5-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-5-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-5-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-5-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-5-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-5-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-5-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-5-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-5-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-5-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-5-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-5-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-5-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-5-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-5-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-5-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-5-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-5-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-5-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-5-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-5-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-5-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-5-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-5-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-5-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-5-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-5-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-5-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-5-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-5-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-5-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-5-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-5-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-5-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-5-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-5-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-5-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-5-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-5-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-5-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-5-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-5-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-5-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-5-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-5-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-5-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-5-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-5-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-5-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-5-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-5-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-5-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-5-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-5-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-5-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-5-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-5-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-5-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-5-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-5-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-5-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-5-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-5-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-5-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-5-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-5-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-5-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-5-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-5-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-6-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-6-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-6-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-6-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-6-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-6-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-6-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-6-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-6-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-6-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-6-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-6-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-6-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-6-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-6-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-6-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-6-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-6-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-6-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-6-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-6-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-6-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-6-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-6-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-6-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-6-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-6-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-6-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-6-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-6-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-6-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-6-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-6-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-6-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-6-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-6-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-6-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-6-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-6-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-6-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-6-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-6-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-6-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-6-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-6-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-6-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-6-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-6-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-6-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-6-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-6-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-6-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-6-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-6-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-6-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-6-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-6-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-6-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-6-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-6-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-6-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-6-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-6-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-6-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-6-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-6-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-6-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-6-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-6-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-6-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-6-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-6-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-6-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-6-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-6-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-6-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-6-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-6-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-6-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-6-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-6-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-6-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-6-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-6-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-6-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-6-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-6-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-6-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-6-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-6-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-6-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-6-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-6-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-6-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-6-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-6-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-6-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-6-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-6-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-6-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-6-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-6-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-6-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-6-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-6-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-6-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-6-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-6-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-6-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-6-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-6-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-6-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-6-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-6-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-6-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-6-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-6-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-6-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-6-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-6-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-6-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-6-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-6-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-6-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-6-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-6-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-6-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-6-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-6-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-6-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-6-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-6-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-6-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-6-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-6-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-6-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-6-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-6-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-6-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-6-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-6-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-6-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-6-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-6-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-6-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-6-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-6-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-6-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-6-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-6-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-6-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-6-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-6-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-6-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-6-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-6-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-6-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-6-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-6-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-6-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-6-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-6-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-6-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-6-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-6-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-6-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-6-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-6-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-6-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-6-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-6-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-6-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-6-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-6-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-6-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-6-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-6-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-6-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-6-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-6-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-6-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-6-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-6-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-6-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-6-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-6-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-6-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-6-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-6-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-6-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-6-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-6-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-6-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-6-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-6-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-6-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-6-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-6-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-6-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-6-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-6-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-6-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-6-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-6-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-6-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-6-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-6-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-6-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-6-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-6-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-6-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-6-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-6-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-6-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-6-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-6-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-6-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-6-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-6-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-6-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-6-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-6-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-6-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-6-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-6-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-6-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-6-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-6-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-6-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-6-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-6-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-6-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-6-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-6-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-6-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-6-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-6-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-6-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-6-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-6-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-6-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-6-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-6-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-6-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-6-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-6-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-6-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-6-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-6-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-6-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-6-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-6-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-6-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-6-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-6-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-6-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-6-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-6-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-6-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-6-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-6-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-6-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-6-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-6-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-6-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-6-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-6-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-6-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-6-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-6-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-6-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-6-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-6-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-6-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-6-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-6-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-6-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-6-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-6-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-6-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-6-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-6-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-6-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-6-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-6-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-6-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-6-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-6-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-6-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-6-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-6-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-6-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-6-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-6-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-6-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-6-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-6-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-6-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-6-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-6-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-6-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-6-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-6-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-6-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-6-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-6-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-6-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-6-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-6-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-6-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-6-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-6-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-6-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-6-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-6-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-6-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-6-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-6-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-6-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-6-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-6-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-6-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-6-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-6-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-6-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-6-9/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-6-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-6-9/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-6-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-6-9/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-6-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-6-9/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-6-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-6-9/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-6-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-6-9/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-6-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-6-9/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-6-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-6-9/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-6-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-6-9/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-6-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-6-9/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-6-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-6-9/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-6-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-6-9/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-6-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-6-9/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-6-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-6-9/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-6-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-6-9/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-6-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-6-9/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-6-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-6-9/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-6-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-6-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-6-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-6-9/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-7-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-7-0/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-7-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-7-0/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-7-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-7-0/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-7-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-7-0/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-7-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-7-0/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-7-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-7-0/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-7-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-7-0/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-7-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-7-0/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-7-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-7-0/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-7-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-7-0/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-7-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-7-0/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-7-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-7-0/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-7-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-7-0/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-7-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-7-0/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-7-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-7-0/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-7-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-7-0/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-7-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-7-0/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-7-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-7-0/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-7-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-7-1/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-7-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-7-1/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-7-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-7-1/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-7-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-7-1/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-7-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-7-1/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-7-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-7-1/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-7-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-7-1/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-7-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-7-1/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-7-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-7-1/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-7-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-7-1/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-7-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-7-1/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-7-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-7-1/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-7-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-7-1/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-7-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-7-1/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-7-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-7-1/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-7-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-7-1/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-7-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-7-1/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-7-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-7-1/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-7-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-7-2/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-7-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-7-2/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-7-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-7-2/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-7-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-7-2/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-7-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-7-2/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-7-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-7-2/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-7-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-7-2/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-7-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-7-2/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-7-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-7-2/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-7-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-7-2/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-7-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-7-2/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-7-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-7-2/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-7-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-7-2/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-7-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-7-2/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-7-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-7-2/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-7-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-7-2/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-7-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-7-2/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-7-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-7-2/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-7-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-7-3/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-7-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-7-3/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-7-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-7-3/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-7-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-7-3/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-7-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-7-3/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-7-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-7-3/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-7-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-7-3/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-7-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-7-3/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-7-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-7-3/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-7-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-7-3/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-7-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-7-3/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-7-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-7-3/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-7-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-7-3/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-7-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-7-3/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-7-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-7-3/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-7-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-7-3/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-7-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-7-3/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-7-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-7-3/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-7-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-7-4/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-7-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-7-4/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-7-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-7-4/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-7-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-7-4/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-7-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-7-4/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-7-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-7-4/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-7-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-7-4/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-7-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-7-4/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-7-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-7-4/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-7-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-7-4/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-7-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-7-4/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-7-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-7-4/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-7-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-7-4/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-7-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-7-4/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-7-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-7-4/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-7-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-7-4/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-7-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-7-4/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-7-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-7-4/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-7-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-7-5/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-7-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-7-5/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-7-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-7-5/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-7-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-7-5/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-7-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-7-5/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-7-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-7-5/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-7-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-7-5/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-7-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-7-5/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-7-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-7-5/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-7-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-7-5/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-7-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-7-5/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-7-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-7-5/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-7-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-7-5/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-7-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-7-5/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-7-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-7-5/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-7-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-7-5/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-7-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-7-5/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-7-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-7-5/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-7-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-7-6/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-7-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-7-6/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-7-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-7-6/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-7-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-7-6/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-7-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-7-6/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-7-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-7-6/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-7-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-7-6/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-7-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-7-6/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-7-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-7-6/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-7-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-7-6/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-7-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-7-6/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-7-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-7-6/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-7-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-7-6/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-7-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-7-6/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-7-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-7-6/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-7-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-7-6/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-7-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-7-6/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-7-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-7-6/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-7-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-7-7/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-7-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-7-7/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-7-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-7-7/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-7-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-7-7/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-7-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-7-7/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-7-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-7-7/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-7-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-7-7/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-7-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-7-7/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-7-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-7-7/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-7-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-7-7/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-7-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-7-7/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-7-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-7-7/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-7-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-7-7/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-7-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-7-7/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-7-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-7-7/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-7-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-7-7/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-7-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-7-7/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-7-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-7-7/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end1.fastq.gz L4-7-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated; gzip L4-7-8/L306-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end1.fastq.gz L4-7-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated; gzip L4-7-8/L307-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end1.fastq.gz L4-7-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated; gzip L4-7-8/L308-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end1.fastq.gz L4-7-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated; gzip L4-7-8/L309-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end1.fastq.gz L4-7-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated; gzip L4-7-8/L310-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end1.fastq.gz L4-7-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated; gzip L4-7-8/L311-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end1.fastq.gz L4-7-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated; gzip L4-7-8/L312-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end1.fastq.gz L4-7-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated; gzip L4-7-8/L313-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_ATAC_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end1.fastq.gz L4-7-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated; gzip L4-7-8/L314-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end1.fastq.gz L4-7-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated; gzip L4-7-8/L315-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_2.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.fastq.gz L4-7-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated; gzip L4-7-8/L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end1.fastq.gz L4-7-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated; gzip L4-7-8/L317-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_4.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end1.fastq.gz L4-7-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated; gzip L4-7-8/L318-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_5.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end1.fastq.gz L4-7-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated; gzip L4-7-8/L319-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_6.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end1.fastq.gz L4-7-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated; gzip L4-7-8/L320-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_7.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end1.fastq.gz L4-7-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated; gzip L4-7-8/L321-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_8.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end1.fastq.gz L4-7-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated; gzip L4-7-8/L322-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_ATAC_20k_1.barcodes_annotated.end*.fastq
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py L4-7-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end1.fastq.gz L4-7-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.end2.fastq.gz | python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 15 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 53 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 91 8 -revcompBC | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - L4-7-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated; gzip L4-7-8/L330-Cercocebus_torquatus_Chlorocebus_pygerythrus-Kidney_RNA_20k_1.barcodes_annotated.end*.fastq