python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999143 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999143 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999144 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999144 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999145 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999145 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999146 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999146 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999189 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999189 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999214 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999214 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999256 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999256 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999259 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999259 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999279 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999279 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999348 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999348 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999367 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999367 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999380 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999380 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999399 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999399 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999468 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999468 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999477 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999477 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999508 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999508 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999527 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999527 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999547 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999547 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999588 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999588 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999589 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999589 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999608 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999608 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999632 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999632 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999672 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999672 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999698 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999698 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999699 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999699 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999710 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999710 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999754 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999754 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999781 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999781 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999798 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999798 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999809 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999809 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999902 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999902 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999914 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999914 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999920 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999920 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999991 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999991 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999998 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_011999998 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000030 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000030 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000081 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000081 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000106 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000106 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000119 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000119 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000140 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000140 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000250 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000250 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000251 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000251 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000265 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000265 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000285 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000285 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000362 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000362 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000407 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000407 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000472 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000472 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000493 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000493 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000509 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000509 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000548 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000548 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000583 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000583 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000606 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000606 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000645 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000645 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000693 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000693 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000696 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000696 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000708 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000708 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000798 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000798 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000809 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000809 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000811 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000811 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000820 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000820 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000823 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000823 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000831 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000831 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000842 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000842 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000853 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000853 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000854 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000854 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000859 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000859 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000865 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000865 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000876 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000876 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000887 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000887 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000898 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000898 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000903 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000903 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000909 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000909 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000920 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000920 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000927 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000927 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000930 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000930 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000931 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000931 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000942 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000942 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000953 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000953 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000964 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000964 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000965 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000965 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000966 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000966 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000970 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000970 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000976 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000976 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000987 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000987 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000998 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012000998 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001009 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001009 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001020 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001020 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001031 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001031 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001033 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001033 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001042 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001042 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001048 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001048 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001053 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001053 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001064 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001064 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001066 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001066 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001075 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001075 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001076 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001076 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001087 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001087 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001091 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001091 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001098 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001098 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001109 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001109 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001111 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001111 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001120 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001120 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001129 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001129 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001131 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001131 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001142 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001142 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001148 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001148 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001153 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001153 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001164 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001164 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001175 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001175 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001186 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001186 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001187 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001187 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001189 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001189 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001198 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001198 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001209 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001209 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001216 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001216 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001219 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001219 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001220 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001220 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001231 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001231 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001242 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001242 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001249 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001249 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001251 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001251 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001262 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001262 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001273 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001273 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001284 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001284 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001295 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001295 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001296 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001296 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001298 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001298 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001307 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001307 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001318 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001318 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001329 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001329 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001338 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001338 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001340 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001340 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001351 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001351 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001362 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001362 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001373 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001373 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001384 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001384 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001395 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001395 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001406 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001406 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001407 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001407 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001418 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001418 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001429 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001429 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001440 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001440 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001446 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001446 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001451 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001451 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001462 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001462 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001473 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001473 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001476 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001476 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001483 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001483 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001484 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001484 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001495 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001495 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001501 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001501 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001505 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001505 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001506 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001506 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001507 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001507 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001517 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001517 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001518 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001518 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001529 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001529 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001540 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001540 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001551 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001551 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001562 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001562 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001573 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001573 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001584 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001584 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001595 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001595 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001605 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001605 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001613 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001613 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001616 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001616 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001627 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001627 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001628 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001628 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001639 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001639 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001650 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001650 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001661 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001661 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001672 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001672 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001678 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001678 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001683 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001683 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001694 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001694 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001705 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001705 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001708 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001708 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001716 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001716 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001727 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001727 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001738 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001738 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001739 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001739 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001740 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001740 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001750 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001750 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001751 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001751 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001762 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001762 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001773 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001773 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001778 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001778 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001784 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001784 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001792 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001792 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001795 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001795 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001806 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001806 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001817 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001817 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001820 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001820 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001828 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001828 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001839 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001839 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001850 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001850 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001851 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001851 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001862 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001862 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001863 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001863 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001873 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001873 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001884 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001884 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001894 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001894 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001905 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001905 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001916 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001916 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001927 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001927 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001931 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001931 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001932 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001932 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001938 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001938 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001949 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001949 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001960 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001960 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001961 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001961 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001971 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001971 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001982 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001982 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001993 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012001993 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002004 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002004 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002010 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002010 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002015 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002015 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002018 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002018 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002026 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002026 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002037 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002037 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002048 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002048 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002059 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002059 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002070 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002070 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002071 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002071 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002082 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002082 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002093 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002093 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002104 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002104 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002115 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002115 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002126 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002126 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002136 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002136 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002137 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002137 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002148 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002148 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002158 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002158 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002159 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002159 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002181 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002181 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002182 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002182 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002186 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002186 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002188 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002188 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002193 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002193 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002204 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002204 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002215 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002215 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002226 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002226 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002237 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002237 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002248 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002248 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002257 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002257 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002268 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002268 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002279 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002279 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002287 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002287 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002290 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002290 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002291 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002291 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002292 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002292 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002302 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002302 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002313 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002313 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002320 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002320 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002324 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002324 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002335 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002335 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002346 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002346 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002352 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002352 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002357 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002357 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002368 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002368 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002379 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002379 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002390 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002390 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002401 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002401 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002402 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002402 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002413 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002413 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002424 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002424 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002435 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002435 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002446 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002446 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002457 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002457 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002468 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002468 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002471 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002471 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002479 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002479 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002490 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002490 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002498 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002498 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002501 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002501 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002511 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002511 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002512 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002512 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002513 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002513 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002522 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002522 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002524 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002524 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002535 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002535 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002544 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002544 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002546 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002546 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002557 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002557 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002568 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002568 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002579 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002579 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002583 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002583 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002590 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002590 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002601 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002601 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002610 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002610 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002612 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002612 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002616 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002616 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002623 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002623 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002624 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002624 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002635 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002635 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002646 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002646 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002657 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002657 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002668 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002668 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002678 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002678 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002689 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002689 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002690 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002690 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002700 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002700 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002711 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002711 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002722 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002722 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002732 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002732 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002733 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002733 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002744 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002744 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002751 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002751 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002755 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002755 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002763 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002763 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002766 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002766 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002777 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002777 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002788 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002788 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002799 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002799 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002810 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002810 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002821 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002821 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002832 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002832 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002838 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002838 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002842 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002842 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002843 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002843 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002844 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002844 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002847 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002847 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002855 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002855 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002866 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002866 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002877 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002877 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002880 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002880 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002888 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002888 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002899 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002899 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002903 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002903 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002910 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002910 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002921 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002921 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002929 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002929 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002932 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002932 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002942 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002942 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002943 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002943 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002948 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002948 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002954 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002954 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002955 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002955 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002961 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002961 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002966 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002966 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002971 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002971 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002977 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002977 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002987 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012002987 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003009 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003009 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003011 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003011 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003013 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003013 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003020 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003020 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003030 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003030 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003032 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003032 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003041 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003041 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003052 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003052 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003063 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003063 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003064 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003064 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003071 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003071 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003075 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003075 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003086 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003086 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003097 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003097 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003100 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003100 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003107 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003107 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003109 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003109 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003118 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003118 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003129 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003129 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003140 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003140 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003155 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003155 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003162 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003162 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003173 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003173 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003174 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003174 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003185 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003185 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003196 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003196 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003207 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003207 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003211 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003211 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003218 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003218 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003229 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003229 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003235 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003235 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003240 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003240 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003243 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003243 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003245 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003245 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003251 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003251 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003262 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003262 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003272 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003272 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003283 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003283 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003284 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003284 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003289 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003289 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003295 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003295 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003306 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003306 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003317 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003317 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003328 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003328 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003339 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003339 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003361 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003361 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003366 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003366 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003371 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003371 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003382 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003382 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003393 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003393 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003394 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003394 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003403 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003403 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003405 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003405 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003406 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003406 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003416 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003416 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003427 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003427 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003433 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003433 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003438 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003438 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003446 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003446 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003449 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003449 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003460 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003460 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003466 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003466 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003470 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003470 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003480 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003480 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003491 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003491 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003502 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003502 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003504 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003504 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003511 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003511 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003514 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003514 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003523 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003523 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003525 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003525 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003547 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003547 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003558 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003558 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003569 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003569 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003580 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003580 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003591 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003591 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003602 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003602 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003613 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003613 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003614 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003614 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003625 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003625 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003636 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003636 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003647 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003647 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003658 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003658 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003680 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003680 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003691 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003691 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003702 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003702 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003712 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003712 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003723 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003723 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003724 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003724 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003728 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003728 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003735 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003735 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003746 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003746 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003757 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003757 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003768 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003768 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003779 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003779 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003790 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003790 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003801 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003801 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003812 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003812 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003823 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003823 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003828 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003828 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003834 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003834 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003858 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003858 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003860 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003860 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003865 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003865 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003868 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003868 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003879 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003879 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003912 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003912 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003923 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003923 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003932 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003932 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003934 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003934 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003945 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003945 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003946 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003946 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003947 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003947 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003958 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003958 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003969 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003969 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003980 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003980 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003991 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012003991 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004001 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004001 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004004 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004004 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004012 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004012 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004016 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004016 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004023 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004023 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004034 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004034 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004036 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004036 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004045 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004045 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004056 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004056 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004057 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004057 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004058 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004058 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004075 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004075 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004079 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004079 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004090 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004090 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004112 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004112 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004134 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004134 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004145 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004145 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004155 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004155 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004160 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004160 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004166 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004166 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004167 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004167 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004178 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004178 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004189 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004189 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004200 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004200 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004211 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004211 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004217 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004217 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004222 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004222 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004233 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004233 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004244 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004244 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004266 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004266 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004276 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004276 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004277 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004277 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004288 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004288 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004299 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004299 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004310 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004310 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004321 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004321 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004354 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004354 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004376 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004376 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004387 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004387 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004409 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004409 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004420 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004420 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004431 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004431 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004442 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004442 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004452 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004452 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004463 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004463 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004474 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004474 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004484 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004484 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004486 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004486 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004495 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004495 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004496 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004496 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004506 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004506 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004517 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004517 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004528 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004528 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004539 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004539 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004550 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004550 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004561 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004561 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004572 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004572 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004584 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004584 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004594 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004594 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004605 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004605 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004611 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004611 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004617 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004617 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004625 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004625 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004628 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004628 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004639 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004639 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004650 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004650 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004671 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004671 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004715 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004715 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004738 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004738 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004760 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004760 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004771 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004771 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004793 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004793 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004804 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004804 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004814 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004814 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004825 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004825 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004837 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004837 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004859 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004859 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004870 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004870 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004885 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004885 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004892 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004892 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004903 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004903 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004914 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004914 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004917 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004917 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004925 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004925 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004936 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004936 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004959 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004959 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004980 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004980 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004984 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004984 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004991 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012004991 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005002 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005002 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005024 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005024 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005030 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005030 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005035 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005035 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005040 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005040 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005046 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005046 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005047 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005047 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005048 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005048 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005059 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005059 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005070 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005070 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005081 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005081 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005092 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005092 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005103 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005103 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005147 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005147 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005158 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005158 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005159 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005159 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005170 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005170 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005181 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005181 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005185 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005185 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005192 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005192 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005203 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005203 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005214 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005214 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005215 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005215 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005225 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005225 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005236 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005236 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005243 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005243 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005257 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005257 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005268 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005268 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005269 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005269 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005313 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005313 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005335 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005335 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005379 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005379 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005402 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005402 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005404 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005404 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005424 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005424 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005435 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005435 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005442 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005442 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005457 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005457 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005468 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005468 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005490 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005490 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005546 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005546 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005593 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005593 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005601 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005601 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005602 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005602 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005613 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005613 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005635 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005635 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005646 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005646 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005690 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005690 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005701 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005701 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005712 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005712 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005718 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005718 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005724 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005724 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005746 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005746 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005757 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005757 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005768 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005768 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005773 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005773 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005817 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005817 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005823 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005823 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005846 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005846 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005857 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005857 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005890 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005890 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005900 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005900 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005911 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005911 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005933 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005933 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005938 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005938 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005951 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005951 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005955 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005955 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005977 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005977 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005999 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012005999 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006011 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006011 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006020 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006020 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006043 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006043 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006062 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006062 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006098 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006098 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006120 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006120 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006127 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006127 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006131 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006131 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006135 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006135 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006142 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006142 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006153 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006153 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006154 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006154 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006155 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006155 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006165 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006165 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006219 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006219 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006227 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006227 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006230 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006230 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006241 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006241 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006263 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006263 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006297 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006297 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006319 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006319 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006330 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006330 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006372 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006372 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006384 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006384 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006391 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006391 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006406 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006406 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006427 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006427 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006445 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006445 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006449 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006449 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006460 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006460 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006471 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006471 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006482 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006482 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006483 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006483 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006502 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006502 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006505 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006505 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006522 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006522 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006527 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006527 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006541 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006541 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006543 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006543 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006544 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006544 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006582 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006582 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006590 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006590 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006593 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006593 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006604 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006604 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006615 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006615 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006648 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006648 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006659 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006659 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006667 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006667 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006670 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006670 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006702 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006702 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006703 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006703 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006714 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006714 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006715 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006715 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006725 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006725 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006758 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006758 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006787 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006787 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006802 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006802 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006813 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006813 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006814 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006814 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006847 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006847 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006849 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006849 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006869 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006869 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006895 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006895 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006902 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006902 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006924 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006924 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006952 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006952 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006958 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006958 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006996 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012006996 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007029 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007029 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007035 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007035 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007062 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007062 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007124 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007124 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007146 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007146 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007149 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007149 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007169 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007169 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007191 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007191 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007213 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007213 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007224 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007224 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007235 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007235 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007246 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007246 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007257 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007257 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007258 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007258 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007281 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007281 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007345 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007345 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007347 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007347 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007369 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007369 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007383 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007383 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007406 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007406 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007434 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007434 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007478 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007478 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007479 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007479 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007520 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007520 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007523 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007523 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007556 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007556 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007589 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007589 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007590 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007590 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007623 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007623 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007634 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007634 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007654 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007654 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007656 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007656 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007667 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007667 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007691 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007691 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007700 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007700 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007724 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007724 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007734 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007734 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007745 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007745 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007767 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007767 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007778 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007778 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007800 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007800 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007811 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007811 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007856 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007856 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007867 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007867 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007910 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007910 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007921 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012007921 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008032 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008032 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008044 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008044 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008073 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008073 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008076 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008076 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008125 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008125 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008131 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008131 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008142 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008142 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008176 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008176 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008198 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008198 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008231 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008231 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008248 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008248 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008253 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008253 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008307 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008307 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008309 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008309 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008362 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008362 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008363 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008363 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008376 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008376 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008408 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008408 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008451 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008451 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008465 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008465 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008473 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008473 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008507 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008507 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008518 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008518 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008543 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008543 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008550 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008550 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008575 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008575 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008583 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008583 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008584 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008584 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008595 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008595 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008694 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008694 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008729 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008729 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008805 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008805 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008817 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008817 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008848 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008848 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008916 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008916 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008928 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008928 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008974 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008974 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008983 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008983 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008999 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012008999 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009005 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009005 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009016 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009016 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009027 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009027 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009039 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009039 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009104 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009104 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009126 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009126 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009133 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009133 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009137 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009137 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009154 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009154 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009182 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009182 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009222 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009222 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009225 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009225 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009248 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009248 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009359 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009359 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009372 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009372 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009382 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009382 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009458 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009458 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009460 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009460 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009464 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009464 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009469 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009469 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009470 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009470 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009488 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009488 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009534 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009534 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009550 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009550 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009581 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009581 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009582 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009582 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009625 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009625 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009656 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009656 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009658 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009658 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009680 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009680 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009691 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009691 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009704 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009704 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009708 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009708 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009714 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009714 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009722 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009722 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009753 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009753 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009758 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009758 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009760 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009760 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009801 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009801 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009848 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009848 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009870 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009870 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009911 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009911 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009949 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009949 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009984 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012009984 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010006 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010006 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010022 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010022 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010133 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010133 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010161 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010161 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010214 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010214 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010243 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010243 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010260 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010260 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010293 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010293 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010315 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010315 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010354 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010354 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010392 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010392 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010465 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010465 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010513 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010513 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010521 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Cercocebus_atys-Caty_1.0.renamed.gtf_split.Cercocebus_atys_012010521 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666033 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666033 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666034 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666034 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666035 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666035 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666036 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666036 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666037 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666037 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666038 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666038 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666039 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666039 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666040 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666040 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666041 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666041 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666042 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666042 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666043 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666043 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666044 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666044 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666045 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666045 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666046 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666046 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666047 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666047 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666048 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666048 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666049 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666049 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666050 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666050 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666051 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666051 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666052 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666052 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666053 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666053 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666054 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666054 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666055 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666055 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666056 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666056 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666057 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666057 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666058 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666058 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666059 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666059 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666060 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666060 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666061 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666061 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666062 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666062 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666063 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666063 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666064 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666064 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666065 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666065 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666066 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666066 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666067 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666067 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666068 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666068 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666069 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666069 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666070 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666070 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666071 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666071 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666072 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666072 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666073 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666073 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666074 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666074 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666075 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666075 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666076 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666076 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666077 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666077 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666078 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666078 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666079 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666079 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666080 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666080 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666081 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666081 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666082 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666082 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666083 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666083 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666084 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666084 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666085 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666085 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666086 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666086 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666087 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666087 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666088 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666088 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666089 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666089 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666090 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666090 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666091 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666091 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666092 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666092 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666093 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666093 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666095 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666095 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666096 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666096 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666097 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666097 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666098 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666098 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666100 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666100 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666101 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666101 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666102 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666102 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666103 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666103 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666104 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666104 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666105 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666105 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666106 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666106 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666107 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666107 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666108 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666108 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666110 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666110 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666113 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666113 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666116 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666116 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666117 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666117 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666118 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666118 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666119 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666119 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666120 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666120 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666122 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666122 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666124 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666124 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666125 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666125 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666126 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666126 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666128 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666128 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666130 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666130 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666131 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666131 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666133 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666133 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666136 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666136 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666139 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666139 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666141 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666141 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666142 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666142 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666144 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666144 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666145 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666145 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666150 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666150 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666152 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666152 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666153 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666153 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666154 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666154 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666155 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666155 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666156 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666156 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666158 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666158 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666159 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666159 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666160 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666160 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666161 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666161 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666167 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666167 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666168 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666168 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666172 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666172 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666173 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666173 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666174 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666174 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666175 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666175 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666177 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666177 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666178 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666178 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666182 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666182 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666187 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666187 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666188 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666188 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666191 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666191 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666194 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666194 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666195 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666195 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666196 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666196 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666198 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666198 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666203 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666203 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666206 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666206 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666207 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666207 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666211 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666211 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666214 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666214 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666215 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666215 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666218 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666218 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666219 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666219 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666221 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666221 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666222 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666222 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666226 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666226 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666230 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666230 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666233 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666233 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666234 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666234 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666237 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666237 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666239 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666239 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666240 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666240 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666241 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666241 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666242 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666242 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666243 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666243 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666244 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666244 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666248 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666248 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666251 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666251 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666253 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666253 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666256 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666256 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666263 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666263 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666264 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666264 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666265 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666265 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666266 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666266 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666269 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666269 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666270 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666270 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666271 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666271 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666274 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666274 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666275 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666275 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666277 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666277 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666280 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666280 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666285 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666285 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666292 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666292 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666294 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666294 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666295 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666295 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666296 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666296 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666300 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666300 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666303 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666303 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666306 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666306 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666310 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666310 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666312 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666312 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666313 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666313 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666318 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666318 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666323 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666323 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666324 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666324 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666329 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666329 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666332 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666332 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666335 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666335 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666336 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666336 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666337 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666337 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666339 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666339 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666344 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666344 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666345 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666345 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666352 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666352 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666353 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666353 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666359 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666359 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666360 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666360 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666361 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666361 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666362 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666362 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666363 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666363 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666368 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666368 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666374 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666374 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666376 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666376 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666377 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666377 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666378 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666378 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666381 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666381 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666384 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666384 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666385 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666385 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666392 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666392 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666393 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666393 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666394 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666394 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666396 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666396 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666399 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666399 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666401 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666401 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666402 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666402 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666403 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666403 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666406 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666406 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666410 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666410 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666411 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666411 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666412 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666412 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666413 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666413 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666415 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666415 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666421 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666421 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666424 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666424 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666428 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666428 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666430 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666430 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666432 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666432 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666433 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666433 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666434 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666434 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666438 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666438 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666440 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666440 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666441 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666441 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666443 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666443 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666444 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666444 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666446 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666446 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666450 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666450 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666451 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666451 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666452 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666452 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666458 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666458 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666466 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666466 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666473 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666473 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666476 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666476 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666480 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666480 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666481 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666481 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666482 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666482 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666485 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666485 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666487 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666487 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666489 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666489 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666493 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666493 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666495 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666495 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666496 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666496 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666498 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666498 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666499 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666499 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666500 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666500 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666503 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666503 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666504 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666504 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666507 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666507 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666514 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666514 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666515 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666515 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666518 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666518 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666519 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666519 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666522 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666522 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666523 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666523 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666527 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666527 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666528 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666528 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666530 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666530 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666531 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666531 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666532 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666532 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666534 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666534 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666538 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666538 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666539 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666539 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666540 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666540 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666541 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666541 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666544 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666544 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666545 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666545 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666546 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666546 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666547 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666547 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666554 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666554 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666556 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666556 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666557 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666557 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666558 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666558 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666559 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666559 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666561 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666561 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666566 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666566 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666567 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666567 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666568 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666568 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666569 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666569 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666570 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666570 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666571 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666571 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666573 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666573 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666574 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666574 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666585 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666585 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666586 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666586 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666592 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666592 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666599 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666599 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666600 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666600 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666604 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666604 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666613 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666613 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666633 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666633 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666634 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666634 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666640 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666640 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666641 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666641 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666642 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666642 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666647 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666647 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666652 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666652 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666653 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666653 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666666 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666666 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666672 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666672 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666674 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666674 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666675 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666675 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666677 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666677 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666678 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666678 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666679 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666679 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666685 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666685 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666686 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666686 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666693 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666693 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666697 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666697 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666699 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666699 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666700 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666700 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666701 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666701 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666702 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666702 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666705 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666705 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666706 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666706 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666709 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666709 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666712 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666712 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666717 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666717 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666718 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666718 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666728 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666728 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666729 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666729 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666731 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666731 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666732 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666732 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666734 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666734 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666743 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666743 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666745 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666745 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666746 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666746 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666750 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666750 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666753 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666753 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666754 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666754 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666755 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666755 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666756 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666756 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666758 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666758 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666759 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666759 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666762 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666762 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666767 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666767 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666775 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666775 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666785 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666785 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666788 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666788 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666790 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666790 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666793 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666793 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666794 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666794 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666801 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666801 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666804 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666804 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666807 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666807 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666808 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666808 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666809 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666809 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666819 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666819 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666825 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666825 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666826 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666826 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666829 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666829 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666832 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666832 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666838 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666838 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666844 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666844 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666848 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666848 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666855 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666855 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666861 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666861 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666862 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666862 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666863 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666863 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666864 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666864 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666865 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666865 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666868 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666868 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666869 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666869 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666870 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666870 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666871 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666871 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666874 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666874 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666875 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666875 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666877 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666877 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666878 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666878 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666881 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666881 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666884 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666884 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666885 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666885 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666886 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666886 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666889 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666889 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666891 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666891 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666892 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666892 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666893 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666893 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666895 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666895 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666896 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666896 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666897 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666897 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666898 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666898 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666900 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666900 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666902 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666902 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666911 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666911 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666912 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666912 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666917 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666917 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666918 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666918 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666919 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666919 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666923 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666923 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666925 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666925 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666927 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666927 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666934 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666934 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666935 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666935 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666942 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666942 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666947 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666947 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666948 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666948 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666954 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666954 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666955 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666955 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666960 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666960 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666961 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666961 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666963 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666963 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666964 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666964 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666965 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666965 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666966 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666966 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666967 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666967 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666968 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666968 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666970 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666970 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666971 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666971 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666972 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666972 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666973 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666973 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666974 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666974 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666975 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666975 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666978 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666978 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666986 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666986 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666993 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666993 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666998 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666998 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666999 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023666999 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667004 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667004 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667006 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667006 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667007 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667007 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667008 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667008 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667010 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667010 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667011 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667011 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667012 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667012 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667014 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667014 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667016 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667016 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667018 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667018 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667020 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667020 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667025 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667025 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667032 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667032 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667033 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667033 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667054 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667054 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667057 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667057 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667059 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667059 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667064 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667064 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667070 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667070 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667073 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667073 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667078 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667078 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667083 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667083 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667086 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667086 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667087 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667087 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667088 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667088 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667089 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667089 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667091 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667091 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667092 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667092 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667093 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667093 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667096 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667096 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667098 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667098 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667100 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667100 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667102 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667102 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667107 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667107 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667108 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667108 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667113 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667113 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667114 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667114 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667117 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667117 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667119 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667119 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667120 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667120 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667121 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667121 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667123 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667123 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667124 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667124 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667128 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667128 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667129 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667129 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667131 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667131 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667135 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667135 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667137 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667137 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667156 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667156 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667160 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667160 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667162 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667162 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667163 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667163 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667164 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667164 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667169 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667169 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667175 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667175 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667176 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667176 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667177 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667177 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667179 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667179 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667189 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667189 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667193 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667193 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667194 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667194 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667199 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667199 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667202 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667202 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667204 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667204 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667205 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667205 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667210 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667210 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667212 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667212 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667213 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667213 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667220 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667220 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667221 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667221 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667226 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667226 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667237 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667237 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667240 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667240 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667245 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667245 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667258 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667258 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667264 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667264 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667271 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667271 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667274 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667274 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667277 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667277 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667283 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667283 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667290 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667290 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667293 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667293 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667294 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667294 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667295 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667295 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667302 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667302 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667303 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667303 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667304 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667304 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667305 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667305 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667306 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667306 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667310 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667310 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667312 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667312 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667317 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667317 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667320 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667320 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667322 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667322 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667325 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667325 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667326 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667326 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667328 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667328 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667330 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667330 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667332 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667332 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667335 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667335 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667336 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667336 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667337 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667337 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667338 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667338 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667341 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667341 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667346 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667346 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667351 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667351 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667354 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667354 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667356 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667356 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667365 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667365 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667369 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667369 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667377 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667377 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667382 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667382 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667383 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667383 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667386 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667386 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667388 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667388 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667390 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667390 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667391 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667391 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667419 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667419 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667422 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667422 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667431 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667431 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667432 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667432 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667433 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667433 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667438 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667438 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667443 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667443 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667445 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667445 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667447 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667447 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667452 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667452 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667454 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667454 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667458 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667458 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667461 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667461 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667463 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667463 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667466 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667466 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667467 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667467 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667468 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667468 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667490 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667490 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667501 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667501 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667507 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667507 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667517 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667517 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667523 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667523 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667526 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667526 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667535 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667535 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667543 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667543 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667545 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667545 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667546 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667546 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667547 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667547 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667551 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667551 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667553 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667553 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667561 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667561 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667565 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667565 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667569 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667569 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667572 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667572 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667581 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667581 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667582 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667582 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667595 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667595 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667599 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667599 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667609 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667609 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667611 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667611 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667612 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667612 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667613 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667613 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667614 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667614 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667624 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667624 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667627 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667627 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667628 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667628 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667630 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667630 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667638 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667638 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667647 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667647 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667651 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667651 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667653 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667653 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667655 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667655 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667657 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667657 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667660 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667660 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667670 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667670 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667673 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667673 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667676 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667676 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667682 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667682 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667683 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667683 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667687 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667687 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667693 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667693 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667696 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667696 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667700 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667700 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667702 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667702 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667706 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667706 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667711 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667711 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667714 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667714 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667719 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667719 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667721 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667721 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667722 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667722 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667725 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667725 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667730 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667730 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667734 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667734 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667738 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667738 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667739 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667739 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667745 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667745 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667746 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667746 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667747 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667747 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667749 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667749 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667751 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667751 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667753 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667753 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667759 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667759 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667760 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667760 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667761 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667761 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667776 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667776 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667779 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667779 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667793 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667793 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667795 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667795 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667800 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667800 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667802 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667802 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667810 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667810 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667815 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667815 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667822 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667822 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667839 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667839 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667840 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667840 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667843 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667843 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667844 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667844 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667853 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667853 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667865 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667865 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667871 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667871 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667876 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667876 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667881 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667881 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667883 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667883 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667885 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667885 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667896 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667896 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667906 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667906 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667909 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667909 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667911 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667911 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667919 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667919 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667920 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667920 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667924 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667924 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667940 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667940 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667946 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667946 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667948 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667948 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667949 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667949 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667952 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667952 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667961 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667961 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667962 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667962 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667974 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667974 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667975 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023667975 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668012 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668012 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668024 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668024 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668027 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668027 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668028 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668028 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668040 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668040 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668042 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668042 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668045 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668045 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668046 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668046 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668048 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668048 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668053 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668053 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668058 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668058 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668059 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668059 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668068 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668068 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668070 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668070 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668071 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668071 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668073 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668073 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668083 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668083 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668098 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668098 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668108 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668108 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668113 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668113 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668114 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668114 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668115 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668115 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668130 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668130 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668139 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668139 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668140 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668140 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668156 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668156 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668157 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668157 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668159 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668159 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668165 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668165 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668175 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668175 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668176 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668176 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668177 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668177 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668178 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668178 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668203 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668203 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668212 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668212 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668213 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668213 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668219 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668219 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668223 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668223 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668224 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668224 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668227 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668227 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668231 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668231 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668232 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668232 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668238 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668238 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668240 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668240 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668243 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668243 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668252 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668252 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668262 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668262 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668264 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668264 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668265 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668265 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668275 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668275 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668281 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668281 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668285 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668285 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668289 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668289 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668296 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668296 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668300 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668300 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668303 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668303 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668317 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668317 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668321 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668321 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668338 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668338 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668339 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668339 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668345 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668345 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668373 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668373 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668381 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668381 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668391 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668391 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668396 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668396 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668397 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668397 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668420 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668420 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668424 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668424 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668458 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668458 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668461 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668461 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668476 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668476 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668478 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668478 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668496 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668496 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668499 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668499 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668506 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668506 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668510 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668510 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668511 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668511 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668512 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668512 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668514 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668514 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668517 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668517 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668532 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668532 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668533 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668533 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668534 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668534 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668536 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668536 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668538 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668538 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668542 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668542 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668546 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668546 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668569 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668569 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668570 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668570 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668571 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668571 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668573 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668573 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668575 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668575 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668589 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668589 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668590 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668590 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668592 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668592 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668620 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668620 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668638 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668638 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668644 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668644 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668665 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668665 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668674 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668674 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668675 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668675 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668680 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668680 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668689 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668689 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668699 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668699 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668701 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668701 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668703 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668703 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668716 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668716 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668722 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668722 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668728 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668728 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668735 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668735 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668742 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668742 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668746 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668746 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668751 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668751 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668759 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668759 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668777 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668777 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668780 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668780 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668782 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668782 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668786 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668786 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668796 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668796 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668803 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668803 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668825 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668825 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668827 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668827 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668828 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668828 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668833 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668833 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668847 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668847 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668857 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668857 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668859 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668859 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668862 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668862 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668875 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668875 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668879 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668879 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668894 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668894 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668895 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668895 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668905 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668905 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668906 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668906 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668920 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668920 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668926 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668926 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668960 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668960 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668968 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668968 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668970 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668970 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668977 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668977 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668987 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668987 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668994 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668994 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668996 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023668996 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669001 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669001 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669006 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669006 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669010 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669010 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669015 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669015 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669022 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669022 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669030 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669030 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669031 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669031 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669033 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669033 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669041 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669041 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669046 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669046 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669049 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669049 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669065 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669065 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669068 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669068 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669081 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669081 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669085 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669085 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669088 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669088 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669091 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669091 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669094 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669094 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669109 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669109 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669110 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669110 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669113 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669113 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669117 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669117 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669123 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669123 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669130 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669130 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669134 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669134 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669146 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669146 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669151 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669151 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669152 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669152 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669154 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669154 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669156 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669156 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669160 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669160 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669172 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669172 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669180 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669180 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669185 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669185 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669188 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669188 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669198 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669198 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669222 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669222 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669223 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669223 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669229 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669229 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669242 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669242 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669258 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669258 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669266 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669266 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669281 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669281 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669288 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669288 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669289 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669289 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669291 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669291 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669295 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669295 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669296 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669296 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669327 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669327 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669328 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669328 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669329 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669329 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669330 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669330 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669336 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669336 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669352 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669352 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669374 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669374 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669378 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669378 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669382 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669382 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669386 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669386 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669395 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669395 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669401 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669401 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669414 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669414 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669423 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669423 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669433 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669433 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669449 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669449 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669452 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669452 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669463 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669463 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669464 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669464 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669468 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669468 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669478 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669478 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669480 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669480 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669482 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669482 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669486 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669486 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669489 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669489 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669492 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669492 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669508 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669508 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669519 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669519 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669527 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669527 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669543 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669543 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669545 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669545 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669562 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669562 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669572 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669572 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669579 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669579 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669594 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669594 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669601 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669601 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669612 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669612 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669635 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669635 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669641 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669641 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669655 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669655 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669657 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669657 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669667 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669667 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669668 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669668 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669701 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669701 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669702 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669702 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669741 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669741 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669746 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669746 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669762 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669762 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669785 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669785 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669789 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669789 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669829 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669829 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669836 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669836 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669841 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669841 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669844 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669844 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669845 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669845 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669848 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669848 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669852 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669852 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669899 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669899 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669909 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669909 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669936 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669936 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669952 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669952 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669959 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669959 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669965 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669965 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669966 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669966 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669968 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669968 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669984 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669984 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669995 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023669995 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670011 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670011 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670018 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670018 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670045 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670045 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670075 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670075 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670080 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670080 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670084 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670084 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670086 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670086 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670091 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670091 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670128 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670128 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670132 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670132 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670145 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670145 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670146 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670146 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670178 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670178 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670191 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670191 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670194 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670194 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670201 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670201 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670205 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670205 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670213 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670213 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670226 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670226 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670228 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670228 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670230 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670230 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670255 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670255 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670274 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670274 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670343 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670343 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670345 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670345 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670349 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670349 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670356 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670356 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670383 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670383 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670413 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670413 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670414 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670414 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670446 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670446 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670448 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670448 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670450 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670450 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670491 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670491 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670531 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670531 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670540 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670540 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670550 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670550 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670556 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670556 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670593 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670593 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670620 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670620 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670625 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670625 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670651 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670651 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670709 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670709 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670721 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670721 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670732 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670732 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670809 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670809 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670819 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670819 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670830 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670830 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670841 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670841 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670859 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670859 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670885 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670885 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670894 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670894 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670896 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670896 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670905 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670905 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670979 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670979 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670981 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023670981 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671005 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671005 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671016 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671016 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671036 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671036 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671072 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671072 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671080 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671080 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671096 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671096 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671135 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671135 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671139 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671139 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671273 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671273 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671292 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671292 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671394 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671394 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671407 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671407 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671602 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671602 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671622 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671622 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671630 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671630 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671663 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671663 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671678 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671678 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671737 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671737 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671848 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671848 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671860 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671860 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671877 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671877 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671908 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671908 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671947 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671947 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671964 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023671964 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023672024 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023672024 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023672128 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023672128 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023672141 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023672141 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023672238 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023672238 -UMIedit 1 & python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_RNA_counts.py SK-L316-Cercocebus_torquatus_Chlorocebus_pygerythrus-FrontalCortex_Cerebellum_RNA_20k_3.end1.Chlorocebus_sabaeus-Vero_WHO_p1.0+Cercocebus_atys-Caty_1.0-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023672807 Cercocebus_atys-Caty_1.0+Chlorocebus_sabaeus-Vero_WHO_p1.0.chrom.sizes SK-L316-Chlorocebus_sabaeus-Vero_WHO_p1.0.renamed.gtf_split.Chlorocebus_sabaeus_023672807 -UMIedit 1 &