python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks0.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks0.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks1.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks1.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks10.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks10.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks11.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks11.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks12.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks12.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks13.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks13.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks14.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks14.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks15.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks15.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks16.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks16.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks17.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks17.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks18.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks18.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks19.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks19.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks2.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks2.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks20.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks20.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks21.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks21.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks22.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks22.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks23.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks23.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks24.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks24.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks25.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks25.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks26.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks26.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks27.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks27.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks28.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks28.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks29.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks29.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks3.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks3.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks30.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks30.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks31.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks31.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks32.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks32.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks33.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks33.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks34.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks34.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks35.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks35.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks36.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks36.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks37.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks37.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks38.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks38.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks39.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks39.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks4.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks4.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks40.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks40.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks41.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks41.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks42.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks42.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks43.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks43.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks44.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks44.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks45.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks45.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks46.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks46.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks47.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks47.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks48.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks48.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks49.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks49.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks5.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks5.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks50.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks50.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks51.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks51.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks52.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks52.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks53.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks53.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks54.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks54.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks55.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks55.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks56.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks56.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks57.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks57.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks58.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks58.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks59.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks59.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks6.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks6.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks60.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks60.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks61.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks61.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks62.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks62.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks63.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks63.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks64.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks64.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks65.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks65.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks66.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks66.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks67.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks67.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks68.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks68.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks69.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks69.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks7.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks7.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks70.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks70.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks71.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks71.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks72.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks72.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks73.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks73.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks74.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks74.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks75.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks75.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks76.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks76.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks77.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks77.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks78.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks78.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks79.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks79.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks8.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks8.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks80.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks80.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks81.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks81.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks82.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks82.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks83.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks83.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks84.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks84.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks85.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks85.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks86.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks86.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks87.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks87.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks88.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks88.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks89.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks89.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks9.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks9.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks90.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks90.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks91.gz | gzip > SK-L068-SHARE_ATAC_3_MEF_HEK_2k.fastq.chunks91.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks0.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks0.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks1.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks1.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks10.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks10.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks100.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks100.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks101.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks101.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks102.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks102.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks103.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks103.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks104.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks104.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks105.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks105.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks106.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks106.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks107.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks107.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks108.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks108.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks109.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks109.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks11.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks11.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks110.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks110.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks111.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks111.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks112.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks112.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks113.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks113.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks114.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks114.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks115.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks115.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks116.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks116.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks117.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks117.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks118.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks118.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks12.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks12.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks13.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks13.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks14.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks14.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks15.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks15.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks16.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks16.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks17.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks17.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks18.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks18.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks19.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks19.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks2.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks2.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks20.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks20.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks21.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks21.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks22.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks22.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks23.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks23.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks24.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks24.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks25.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks25.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks26.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks26.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks27.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks27.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks28.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks28.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks29.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks29.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks3.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks3.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks30.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks30.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks31.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks31.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks32.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks32.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks33.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks33.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks34.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks34.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks35.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks35.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks36.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks36.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks37.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks37.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks38.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks38.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks39.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks39.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks4.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks4.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks40.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks40.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks41.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks41.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks42.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks42.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks43.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks43.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks44.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks44.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks45.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks45.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks46.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks46.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks47.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks47.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks48.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks48.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks49.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks49.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks5.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks5.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks50.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks50.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks51.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks51.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks52.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks52.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks53.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks53.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks54.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks54.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks55.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks55.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks56.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks56.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks57.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks57.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks58.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks58.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks59.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks59.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks6.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks6.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks60.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks60.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks61.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks61.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks62.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks62.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks63.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks63.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks64.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks64.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks65.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks65.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks66.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks66.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks67.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks67.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks68.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks68.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks69.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks69.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks7.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks7.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks70.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks70.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks71.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks71.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks72.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks72.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks73.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks73.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks74.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks74.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks75.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks75.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks76.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks76.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks77.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks77.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks78.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks78.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks79.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks79.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks8.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks8.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks80.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks80.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks81.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks81.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks82.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks82.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks83.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks83.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks84.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks84.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks85.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks85.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks86.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks86.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks87.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks87.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks88.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks88.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks89.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks89.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks9.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks9.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks90.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks90.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks91.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks91.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks92.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks92.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks93.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks93.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks94.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks94.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks95.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks95.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks96.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks96.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks97.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks97.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks98.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks98.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks99.gz | gzip > SK-L069-SHARE_ATAC_4_MEF_HEK_2k.fastq.chunks99.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks0.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks0.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks1.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks1.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks10.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks10.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks100.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks100.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks101.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks101.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks102.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks102.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks103.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks103.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks104.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks104.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks105.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks105.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks106.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks106.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks107.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks107.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks108.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks108.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks109.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks109.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks11.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks11.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks110.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks110.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks111.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks111.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks112.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks112.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks113.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks113.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks114.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks114.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks115.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks115.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks116.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks116.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks117.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks117.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks118.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks118.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks119.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks119.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks12.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks12.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks120.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks120.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks121.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks121.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks122.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks122.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks123.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks123.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks124.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks124.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks125.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks125.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks126.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks126.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks127.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks127.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks128.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks128.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks129.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks129.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks13.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks13.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks130.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks130.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks131.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks131.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks132.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks132.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks133.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks133.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks134.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks134.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks135.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks135.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks136.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks136.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks137.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks137.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks138.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks138.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks139.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks139.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks14.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks14.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks140.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks140.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks141.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks141.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks142.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks142.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks143.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks143.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks144.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks144.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks145.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks145.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks146.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks146.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks147.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks147.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks148.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks148.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks149.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks149.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks15.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks15.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks150.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks150.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks151.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks151.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks152.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks152.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks16.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks16.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks17.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks17.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks18.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks18.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks19.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks19.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks2.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks2.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks20.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks20.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks21.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks21.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks22.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks22.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks23.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks23.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks24.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks24.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks25.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks25.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks26.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks26.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks27.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks27.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks28.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks28.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks29.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks29.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks3.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks3.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks30.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks30.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks31.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks31.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks32.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks32.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks33.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks33.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks34.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks34.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks35.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks35.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks36.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks36.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks37.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks37.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks38.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks38.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks39.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks39.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks4.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks4.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks40.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks40.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks41.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks41.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks42.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks42.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks43.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks43.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks44.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks44.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks45.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks45.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks46.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks46.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks47.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks47.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks48.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks48.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks49.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks49.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks5.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks5.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks50.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks50.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks51.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks51.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks52.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks52.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks53.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks53.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks54.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks54.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks55.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks55.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks56.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks56.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks57.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks57.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks58.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks58.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks59.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks59.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks6.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks6.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks60.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks60.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks61.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks61.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks62.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks62.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks63.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks63.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks64.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks64.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks65.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks65.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks66.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks66.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks67.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks67.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks68.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks68.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks69.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks69.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks7.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks7.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks70.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks70.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks71.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks71.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks72.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks72.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks73.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks73.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks74.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks74.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks75.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks75.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks76.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks76.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks77.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks77.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks78.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks78.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks79.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks79.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks8.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks8.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks80.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks80.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks81.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks81.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks82.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks82.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks83.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks83.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks84.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks84.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks85.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks85.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks86.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks86.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks87.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks87.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks88.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks88.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks89.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks89.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks9.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks9.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks90.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks90.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks91.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks91.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks92.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks92.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks93.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks93.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks94.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks94.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks95.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks95.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks96.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks96.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks97.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks97.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks98.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks98.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks99.gz | gzip > SK-L072-SHARE_RNA_2_MEF_HEK_2K_2uLTn5.fastq.chunks99.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks0.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks0.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks1.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks1.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks10.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks10.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks100.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks100.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks101.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks101.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks102.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks102.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks103.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks103.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks104.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks104.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks105.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks105.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks106.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks106.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks107.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks107.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks108.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks108.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks109.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks109.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks11.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks11.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks110.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks110.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks111.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks111.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks112.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks112.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks113.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks113.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks114.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks114.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks115.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks115.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks116.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks116.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks117.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks117.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks118.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks118.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks119.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks119.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks12.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks12.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks120.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks120.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks121.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks121.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks122.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks122.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks123.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks123.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks124.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks124.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks125.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks125.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks126.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks126.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks127.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks127.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks128.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks128.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks129.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks129.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks13.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks13.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks130.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks130.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks131.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks131.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks132.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks132.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks133.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks133.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks134.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks134.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks135.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks135.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks136.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks136.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks14.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks14.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks15.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks15.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks16.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks16.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks17.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks17.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks18.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks18.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks19.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks19.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks2.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks2.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks20.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks20.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks21.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks21.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks22.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks22.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks23.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks23.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks24.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks24.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks25.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks25.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks26.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks26.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks27.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks27.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks28.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks28.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks29.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks29.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks3.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks3.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks30.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks30.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks31.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks31.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks32.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks32.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks33.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks33.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks34.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks34.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks35.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks35.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks36.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks36.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks37.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks37.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks38.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks38.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks39.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks39.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks4.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks4.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks40.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks40.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks41.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks41.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks42.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks42.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks43.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks43.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks44.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks44.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks45.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks45.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks46.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks46.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks47.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks47.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks48.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks48.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks49.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks49.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks5.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks5.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks50.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks50.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks51.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks51.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks52.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks52.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks53.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks53.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks54.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks54.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks55.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks55.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks56.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks56.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks57.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks57.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks58.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks58.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks59.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks59.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks6.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks6.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks60.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks60.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks61.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks61.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks62.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks62.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks63.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks63.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks64.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks64.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks65.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks65.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks66.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks66.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks67.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks67.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks68.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks68.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks69.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks69.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks7.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks7.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks70.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks70.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks71.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks71.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks72.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks72.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks73.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks73.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks74.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks74.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks75.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks75.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks76.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks76.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks77.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks77.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks78.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks78.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks79.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks79.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks8.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks8.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks80.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks80.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks81.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks81.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks82.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks82.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks83.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks83.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks84.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks84.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks85.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks85.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks86.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks86.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks87.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks87.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks88.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks88.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks89.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks89.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks9.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks9.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks90.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks90.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks91.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks91.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks92.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks92.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks93.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks93.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks94.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks94.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks95.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks95.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks96.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks96.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks97.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks97.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks98.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks98.barcodes_annotated.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-barcode-annotate-UG.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R1.tsv 2 24 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R2.tsv 2 62 8 /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/SHARE-seq-barcodes/Plate_R3.tsv 2 100 8 SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks99.gz | gzip > SK-L073-SHARE_RNA_2_MEF_HEK_2K_1uLTn5.fastq.chunks99.barcodes_annotated.gz