## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L3481-CRE-rep1.hg38-male.2x36mers.unique.bam] OUTPUT=L3481-CRE-rep1.hg38-male.2x36mers.unique.dedup.bam METRICS_FILE=L3481-CRE-rep1.hg38-male.2x36mers.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sun Jan 26 17:26:29 PST 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	35344	0	0	4613	627	0.130517	139379

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.015868
2.0	1.804198
3.0	2.415955
4.0	2.890689
5.0	3.259089
6.0	3.544974
7.0	3.766825
8.0	3.938985
9.0	4.072585
10.0	4.17626
11.0	4.256713
12.0	4.319146
13.0	4.367595
14.0	4.405193
15.0	4.434369
16.0	4.45701
17.0	4.47458
18.0	4.488215
19.0	4.498795
20.0	4.507006
21.0	4.513378
22.0	4.518322
23.0	4.522159
24.0	4.525137
25.0	4.527447
26.0	4.52924
27.0	4.530632
28.0	4.531712
29.0	4.53255
30.0	4.5332
31.0	4.533705
32.0	4.534096
33.0	4.5344
34.0	4.534636
35.0	4.534819
36.0	4.534961
37.0	4.535071
38.0	4.535157
39.0	4.535223
40.0	4.535274
41.0	4.535314
42.0	4.535345
43.0	4.535369
44.0	4.535388
45.0	4.535403
46.0	4.535414
47.0	4.535423
48.0	4.535429
49.0	4.535435
50.0	4.535439
51.0	4.535442
52.0	4.535444
53.0	4.535446
54.0	4.535448
55.0	4.535449
56.0	4.53545
57.0	4.53545
58.0	4.535451
59.0	4.535451
60.0	4.535452
61.0	4.535452
62.0	4.535452
63.0	4.535452
64.0	4.535452
65.0	4.535452
66.0	4.535453
67.0	4.535453
68.0	4.535453
69.0	4.535453
70.0	4.535453
71.0	4.535453
72.0	4.535453
73.0	4.535453
74.0	4.535453
75.0	4.535453
76.0	4.535453
77.0	4.535453
78.0	4.535453
79.0	4.535453
80.0	4.535453
81.0	4.535453
82.0	4.535453
83.0	4.535453
84.0	4.535453
85.0	4.535453
86.0	4.535453
87.0	4.535453
88.0	4.535453
89.0	4.535453
90.0	4.535453
91.0	4.535453
92.0	4.535453
93.0	4.535453
94.0	4.535453
95.0	4.535453
96.0	4.535453
97.0	4.535453
98.0	4.535453
99.0	4.535453
100.0	4.535453