## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[L1793-Bigelowiella_natans-KAS.2x36mers.unique.bam] OUTPUT=L1793-Bigelowiella_natans-KAS.2x36mers.unique.dedup.bam METRICS_FILE=L1793-Bigelowiella_natans-KAS.2x36mers.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Tue Sep 29 01:12:50 PDT 2020 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 14201557 0 0 1988533 221984 0.140022 50548397 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1.013754 2.0 1.779206 3.0 2.357173 4.0 2.793576 5.0 3.123089 6.0 3.371894 7.0 3.559758 8.0 3.701607 9.0 3.808713 10.0 3.889585 11.0 3.950649 12.0 3.996756 13.0 4.03157 14.0 4.057857 15.0 4.077706 16.0 4.092692 17.0 4.104008 18.0 4.112553 19.0 4.119004 20.0 4.123876 21.0 4.127554 22.0 4.130331 23.0 4.132428 24.0 4.134012 25.0 4.135207 26.0 4.13611 27.0 4.136792 28.0 4.137306 29.0 4.137695 30.0 4.137988 31.0 4.13821 32.0 4.138377 33.0 4.138503 34.0 4.138599 35.0 4.138671 36.0 4.138725 37.0 4.138766 38.0 4.138797 39.0 4.138821 40.0 4.138838 41.0 4.138852 42.0 4.138862 43.0 4.138869 44.0 4.138875 45.0 4.138879 46.0 4.138883 47.0 4.138885 48.0 4.138887 49.0 4.138888 50.0 4.13889 51.0 4.13889 52.0 4.138891 53.0 4.138891 54.0 4.138892 55.0 4.138892 56.0 4.138892 57.0 4.138892 58.0 4.138892 59.0 4.138893 60.0 4.138893 61.0 4.138893 62.0 4.138893 63.0 4.138893 64.0 4.138893 65.0 4.138893 66.0 4.138893 67.0 4.138893 68.0 4.138893 69.0 4.138893 70.0 4.138893 71.0 4.138893 72.0 4.138893 73.0 4.138893 74.0 4.138893 75.0 4.138893 76.0 4.138893 77.0 4.138893 78.0 4.138893 79.0 4.138893 80.0 4.138893 81.0 4.138893 82.0 4.138893 83.0 4.138893 84.0 4.138893 85.0 4.138893 86.0 4.138893 87.0 4.138893 88.0 4.138893 89.0 4.138893 90.0 4.138893 91.0 4.138893 92.0 4.138893 93.0 4.138893 94.0 4.138893 95.0 4.138893 96.0 4.138893 97.0 4.138893 98.0 4.138893 99.0 4.138893 100.0 4.138893