## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1687-Haloferax_volcanii_stationary/L1687-Haloferax_volcanii_stationary.2x36mers.a.bam] OUTPUT=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1687-Haloferax_volcanii_stationary/L1687-Haloferax_volcanii_stationary.2x36mers.a.dedup.bam METRICS_FILE=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1687-Haloferax_volcanii_stationary/L1687-Haloferax_volcanii_stationary.2x36mers.a.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 25 03:21:25 PDT 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	16748838	437328	0	951850	256471	0.056831	190038502

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.014876
2.0	1.944135
3.0	2.795
4.0	3.574085
5.0	4.287445
6.0	4.940624
7.0	5.5387
8.0	6.086322
9.0	6.587745
10.0	7.046867
11.0	7.467257
12.0	7.852182
13.0	8.204634
14.0	8.527352
15.0	8.822846
16.0	9.093411
17.0	9.34115
18.0	9.56799
19.0	9.775694
20.0	9.965875
21.0	10.140012
22.0	10.299459
23.0	10.445454
24.0	10.579133
25.0	10.701535
26.0	10.81361
27.0	10.916231
28.0	11.010194
29.0	11.096231
30.0	11.175009
31.0	11.247142
32.0	11.313189
33.0	11.373664
34.0	11.429038
35.0	11.47974
36.0	11.526165
37.0	11.568673
38.0	11.607595
39.0	11.643234
40.0	11.675866
41.0	11.705746
42.0	11.733104
43.0	11.758155
44.0	11.781092
45.0	11.802094
46.0	11.821325
47.0	11.838933
48.0	11.855056
49.0	11.869818
50.0	11.883335
51.0	11.895712
52.0	11.907045
53.0	11.917421
54.0	11.926923
55.0	11.935622
56.0	11.943588
57.0	11.950882
58.0	11.95756
59.0	11.963676
60.0	11.969275
61.0	11.974402
62.0	11.979096
63.0	11.983394
64.0	11.98733
65.0	11.990933
66.0	11.994233
67.0	11.997254
68.0	12.000021
69.0	12.002554
70.0	12.004873
71.0	12.006997
72.0	12.008941
73.0	12.010722
74.0	12.012352
75.0	12.013845
76.0	12.015212
77.0	12.016463
78.0	12.017609
79.0	12.018658
80.0	12.019619
81.0	12.020499
82.0	12.021304
83.0	12.022042
84.0	12.022717
85.0	12.023335
86.0	12.023902
87.0	12.02442
88.0	12.024895
89.0	12.025329
90.0	12.025727
91.0	12.026092
92.0	12.026425
93.0	12.026731
94.0	12.027011
95.0	12.027267
96.0	12.027501
97.0	12.027716
98.0	12.027913
99.0	12.028093
100.0	12.028257