## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1685-Haloferax_volcanii_exponential/L1685-Haloferax_volcanii_exponential.2x36mers.a.bam] OUTPUT=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1685-Haloferax_volcanii_exponential/L1685-Haloferax_volcanii_exponential.2x36mers.a.dedup.bam METRICS_FILE=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1685-Haloferax_volcanii_exponential/L1685-Haloferax_volcanii_exponential.2x36mers.a.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 25 03:21:25 PDT 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	20732853	692718	0	1524996	299824	0.073555	163506437

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.013763
2.0	1.906796
3.0	2.693476
4.0	3.386469
5.0	3.996933
6.0	4.534695
7.0	5.008415
8.0	5.425719
9.0	5.793325
10.0	6.117153
11.0	6.402415
12.0	6.653706
13.0	6.875069
14.0	7.070071
15.0	7.241849
16.0	7.39317
17.0	7.52647
18.0	7.643895
19.0	7.747335
20.0	7.838457
21.0	7.918727
22.0	7.989438
23.0	8.051727
24.0	8.106598
25.0	8.154935
26.0	8.197515
27.0	8.235024
28.0	8.268067
29.0	8.297174
30.0	8.322815
31.0	8.345402
32.0	8.365299
33.0	8.382827
34.0	8.398267
35.0	8.411868
36.0	8.42385
37.0	8.434405
38.0	8.443702
39.0	8.451893
40.0	8.459108
41.0	8.465464
42.0	8.471062
43.0	8.475995
44.0	8.480339
45.0	8.484167
46.0	8.487538
47.0	8.490508
48.0	8.493124
49.0	8.495429
50.0	8.497459
51.0	8.499248
52.0	8.500823
53.0	8.502211
54.0	8.503434
55.0	8.504511
56.0	8.505459
57.0	8.506295
58.0	8.507031
59.0	8.50768
60.0	8.508251
61.0	8.508754
62.0	8.509198
63.0	8.509588
64.0	8.509932
65.0	8.510235
66.0	8.510502
67.0	8.510737
68.0	8.510944
69.0	8.511127
70.0	8.511288
71.0	8.511429
72.0	8.511554
73.0	8.511664
74.0	8.511761
75.0	8.511846
76.0	8.511921
77.0	8.511987
78.0	8.512046
79.0	8.512097
80.0	8.512142
81.0	8.512182
82.0	8.512217
83.0	8.512248
84.0	8.512275
85.0	8.512299
86.0	8.51232
87.0	8.512339
88.0	8.512355
89.0	8.51237
90.0	8.512383
91.0	8.512394
92.0	8.512404
93.0	8.512412
94.0	8.51242
95.0	8.512427
96.0	8.512433
97.0	8.512438
98.0	8.512443
99.0	8.512447
100.0	8.51245