## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L1678-Tetrahymena_thermophila_exponential.2x36mers.unique.bam] OUTPUT=L1678-Tetrahymena_thermophila_exponential.2x36mers.unique.dedup.bam METRICS_FILE=L1678-Tetrahymena_thermophila_exponential.2x36mers.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Aug 17 19:07:21 PDT 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	1945053	1483718	0	104036	26289	0.053487	23033150

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.013131
2.0	1.94422
3.0	2.79991
4.0	3.586308
5.0	4.309025
6.0	4.973217
7.0	5.583624
8.0	6.144601
9.0	6.660151
10.0	7.133953
11.0	7.569386
12.0	7.969559
13.0	8.337327
14.0	8.675313
15.0	8.985929
16.0	9.271393
17.0	9.533739
18.0	9.774842
19.0	9.99642
20.0	10.200055
21.0	10.387201
22.0	10.559191
23.0	10.717254
24.0	10.862517
25.0	10.996017
26.0	11.118706
27.0	11.23146
28.0	11.335084
29.0	11.430316
30.0	11.517836
31.0	11.59827
32.0	11.672189
33.0	11.740123
34.0	11.802556
35.0	11.859933
36.0	11.912663
37.0	11.961124
38.0	12.00566
39.0	12.04659
40.0	12.084206
41.0	12.118775
42.0	12.150545
43.0	12.179742
44.0	12.206575
45.0	12.231235
46.0	12.253899
47.0	12.274726
48.0	12.293868
49.0	12.311459
50.0	12.327626
51.0	12.342483
52.0	12.356138
53.0	12.368686
54.0	12.380219
55.0	12.390818
56.0	12.400558
57.0	12.40951
58.0	12.417736
59.0	12.425297
60.0	12.432245
61.0	12.438631
62.0	12.444499
63.0	12.449893
64.0	12.454849
65.0	12.459404
66.0	12.463591
67.0	12.467438
68.0	12.470974
69.0	12.474223
70.0	12.47721
71.0	12.479954
72.0	12.482476
73.0	12.484794
74.0	12.486925
75.0	12.488882
76.0	12.490682
77.0	12.492335
78.0	12.493855
79.0	12.495251
80.0	12.496535
81.0	12.497715
82.0	12.498799
83.0	12.499795
84.0	12.50071
85.0	12.501552
86.0	12.502325
87.0	12.503036
88.0	12.503689
89.0	12.504289
90.0	12.504841
91.0	12.505348
92.0	12.505814
93.0	12.506242
94.0	12.506635
95.0	12.506997
96.0	12.507329
97.0	12.507635
98.0	12.507915
99.0	12.508173
100.0	12.508411