## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L1677-Tetrahymena_pyrrhiformis_standing.2x36mers.unique.bam] OUTPUT=L1677-Tetrahymena_pyrrhiformis_standing.2x36mers.unique.dedup.bam METRICS_FILE=L1677-Tetrahymena_pyrrhiformis_standing.2x36mers.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Aug 17 19:06:44 PDT 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	53438	17009030	0	20804	2204	0.389311	52184

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.024772
2.0	1.392813
3.0	1.524993
4.0	1.572465
5.0	1.589514
6.0	1.595637
7.0	1.597836
8.0	1.598626
9.0	1.598909
10.0	1.599011
11.0	1.599048
12.0	1.599061
13.0	1.599066
14.0	1.599068
15.0	1.599068
16.0	1.599068
17.0	1.599068
18.0	1.599068
19.0	1.599068
20.0	1.599068
21.0	1.599068
22.0	1.599068
23.0	1.599068
24.0	1.599068
25.0	1.599068
26.0	1.599068
27.0	1.599068
28.0	1.599068
29.0	1.599068
30.0	1.599068
31.0	1.599068
32.0	1.599068
33.0	1.599068
34.0	1.599068
35.0	1.599068
36.0	1.599068
37.0	1.599068
38.0	1.599068
39.0	1.599068
40.0	1.599068
41.0	1.599068
42.0	1.599068
43.0	1.599068
44.0	1.599068
45.0	1.599068
46.0	1.599068
47.0	1.599068
48.0	1.599068
49.0	1.599068
50.0	1.599068
51.0	1.599068
52.0	1.599068
53.0	1.599068
54.0	1.599068
55.0	1.599068
56.0	1.599068
57.0	1.599068
58.0	1.599068
59.0	1.599068
60.0	1.599068
61.0	1.599068
62.0	1.599068
63.0	1.599068
64.0	1.599068
65.0	1.599068
66.0	1.599068
67.0	1.599068
68.0	1.599068
69.0	1.599068
70.0	1.599068
71.0	1.599068
72.0	1.599068
73.0	1.599068
74.0	1.599068
75.0	1.599068
76.0	1.599068
77.0	1.599068
78.0	1.599068
79.0	1.599068
80.0	1.599068
81.0	1.599068
82.0	1.599068
83.0	1.599068
84.0	1.599068
85.0	1.599068
86.0	1.599068
87.0	1.599068
88.0	1.599068
89.0	1.599068
90.0	1.599068
91.0	1.599068
92.0	1.599068
93.0	1.599068
94.0	1.599068
95.0	1.599068
96.0	1.599068
97.0	1.599068
98.0	1.599068
99.0	1.599068
100.0	1.599068