## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L1618-Cas9_sg38290_clicked_sheared.2x36mers.hg38-female.unique.bam] OUTPUT=L1618-Cas9_sg38290_clicked_sheared.2x36mers.hg38-female.unique.dedup.bam METRICS_FILE=L1618-Cas9_sg38290_clicked_sheared.2x36mers.hg38-female.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Jul 16 00:20:16 PDT 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	15826075	0	0	1210187	200703	0.076468	115662672

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011986
2.0	1.894558
3.0	2.664266
4.0	3.335543
5.0	3.920976
6.0	4.431543
7.0	4.876819
8.0	5.265152
9.0	5.603824
10.0	5.899187
11.0	6.156778
12.0	6.381428
13.0	6.57735
14.0	6.748217
15.0	6.897233
16.0	7.027193
17.0	7.140534
18.0	7.23938
19.0	7.325586
20.0	7.400768
21.0	7.466335
22.0	7.523518
23.0	7.573388
24.0	7.61688
25.0	7.654811
26.0	7.687891
27.0	7.716741
28.0	7.741901
29.0	7.763844
30.0	7.782981
31.0	7.79967
32.0	7.814226
33.0	7.82692
34.0	7.83799
35.0	7.847645
36.0	7.856065
37.0	7.863409
38.0	7.869813
39.0	7.875399
40.0	7.88027
41.0	7.884518
42.0	7.888223
43.0	7.891454
44.0	7.894272
45.0	7.896729
46.0	7.898873
47.0	7.900742
48.0	7.902372
49.0	7.903794
50.0	7.905033
51.0	7.906115
52.0	7.907058
53.0	7.90788
54.0	7.908598
55.0	7.909223
56.0	7.909769
57.0	7.910244
58.0	7.910659
59.0	7.911021
60.0	7.911337
61.0	7.911612
62.0	7.911852
63.0	7.912062
64.0	7.912244
65.0	7.912403
66.0	7.912542
67.0	7.912663
68.0	7.912769
69.0	7.912861
70.0	7.912941
71.0	7.913011
72.0	7.913073
73.0	7.913126
74.0	7.913172
75.0	7.913213
76.0	7.913248
77.0	7.913279
78.0	7.913306
79.0	7.913329
80.0	7.91335
81.0	7.913368
82.0	7.913383
83.0	7.913397
84.0	7.913409
85.0	7.913419
86.0	7.913428
87.0	7.913436
88.0	7.913443
89.0	7.913449
90.0	7.913454
91.0	7.913458
92.0	7.913462
93.0	7.913466
94.0	7.913469
95.0	7.913471
96.0	7.913474
97.0	7.913476
98.0	7.913477
99.0	7.913479
100.0	7.91348

