## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1531-Haloferax_volcanii_23C_rep2-KAS/L1531-Haloferax_volcanii_23C_rep2-KAS.2x36mers.a.bam] OUTPUT=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1531-Haloferax_volcanii_23C_rep2-KAS/L1531-Haloferax_volcanii_23C_rep2-KAS.2x36mers.a.dedup.bam METRICS_FILE=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1531-Haloferax_volcanii_23C_rep2-KAS/L1531-Haloferax_volcanii_23C_rep2-KAS.2x36mers.a.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 25 03:21:25 PDT 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	24446999	9551688	0	5612919	664585	0.229595	48912979

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.021552
2.0	1.641276
3.0	2.01723
4.0	2.245301
5.0	2.383661
6.0	2.467596
7.0	2.518516
8.0	2.549406
9.0	2.568145
10.0	2.579514
11.0	2.58641
12.0	2.590594
13.0	2.593132
14.0	2.594672
15.0	2.595606
16.0	2.596172
17.0	2.596516
18.0	2.596725
19.0	2.596851
20.0	2.596928
21.0	2.596975
22.0	2.597003
23.0	2.59702
24.0	2.59703
25.0	2.597037
26.0	2.59704
27.0	2.597043
28.0	2.597044
29.0	2.597045
30.0	2.597046
31.0	2.597046
32.0	2.597046
33.0	2.597046
34.0	2.597046
35.0	2.597046
36.0	2.597046
37.0	2.597046
38.0	2.597046
39.0	2.597046
40.0	2.597046
41.0	2.597046
42.0	2.597046
43.0	2.597046
44.0	2.597046
45.0	2.597046
46.0	2.597046
47.0	2.597046
48.0	2.597046
49.0	2.597046
50.0	2.597046
51.0	2.597046
52.0	2.597046
53.0	2.597046
54.0	2.597046
55.0	2.597046
56.0	2.597046
57.0	2.597046
58.0	2.597046
59.0	2.597046
60.0	2.597046
61.0	2.597046
62.0	2.597046
63.0	2.597046
64.0	2.597046
65.0	2.597046
66.0	2.597046
67.0	2.597046
68.0	2.597046
69.0	2.597046
70.0	2.597046
71.0	2.597046
72.0	2.597046
73.0	2.597046
74.0	2.597046
75.0	2.597046
76.0	2.597046
77.0	2.597046
78.0	2.597046
79.0	2.597046
80.0	2.597046
81.0	2.597046
82.0	2.597046
83.0	2.597046
84.0	2.597046
85.0	2.597046
86.0	2.597046
87.0	2.597046
88.0	2.597046
89.0	2.597046
90.0	2.597046
91.0	2.597046
92.0	2.597046
93.0	2.597046
94.0	2.597046
95.0	2.597046
96.0	2.597046
97.0	2.597046
98.0	2.597046
99.0	2.597046
100.0	2.597046