## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1530-Haloferax_volcanii_23C_rep1-KAS/L1530-Haloferax_volcanii_23C_rep1-KAS.2x36mers.a.bam] OUTPUT=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1530-Haloferax_volcanii_23C_rep1-KAS/L1530-Haloferax_volcanii_23C_rep1-KAS.2x36mers.a.dedup.bam METRICS_FILE=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1530-Haloferax_volcanii_23C_rep1-KAS/L1530-Haloferax_volcanii_23C_rep1-KAS.2x36mers.a.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 25 03:21:10 PDT 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	4396531	1271586	0	265044	59974	0.060285	44394760

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.013157
2.0	1.930786
3.0	2.761894
4.0	3.514641
5.0	4.196413
6.0	4.813903
7.0	5.373171
8.0	5.879708
9.0	6.338485
10.0	6.754006
11.0	7.130348
12.0	7.471207
13.0	7.779927
14.0	8.059538
15.0	8.312786
16.0	8.542156
17.0	8.749899
18.0	8.938055
19.0	9.10847
20.0	9.262818
21.0	9.402612
22.0	9.529226
23.0	9.643901
24.0	9.747765
25.0	9.841835
26.0	9.927036
27.0	10.004203
28.0	10.074095
29.0	10.137396
30.0	10.194729
31.0	10.246657
32.0	10.293688
33.0	10.336285
34.0	10.374866
35.0	10.409808
36.0	10.441457
37.0	10.470121
38.0	10.496083
39.0	10.519596
40.0	10.540893
41.0	10.560182
42.0	10.577652
43.0	10.593475
44.0	10.607806
45.0	10.620785
46.0	10.632541
47.0	10.643189
48.0	10.652832
49.0	10.661567
50.0	10.669477
51.0	10.676642
52.0	10.683132
53.0	10.689009
54.0	10.694332
55.0	10.699154
56.0	10.703521
57.0	10.707476
58.0	10.711058
59.0	10.714302
60.0	10.717241
61.0	10.719902
62.0	10.722313
63.0	10.724496
64.0	10.726473
65.0	10.728264
66.0	10.729886
67.0	10.731355
68.0	10.732686
69.0	10.733891
70.0	10.734983
71.0	10.735971
72.0	10.736867
73.0	10.737678
74.0	10.738412
75.0	10.739077
76.0	10.73968
77.0	10.740226
78.0	10.74072
79.0	10.741167
80.0	10.741573
81.0	10.74194
82.0	10.742273
83.0	10.742574
84.0	10.742847
85.0	10.743094
86.0	10.743318
87.0	10.74352
88.0	10.743704
89.0	10.74387
90.0	10.744021
91.0	10.744157
92.0	10.744281
93.0	10.744393
94.0	10.744494
95.0	10.744586
96.0	10.744669
97.0	10.744744
98.0	10.744813
99.0	10.744874
100.0	10.74493