## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1527-Haloferax_volcanii_42C_rep2-KAS/L1527-Haloferax_volcanii_42C_rep2-KAS.2x36mers.a.bam] OUTPUT=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1527-Haloferax_volcanii_42C_rep2-KAS/L1527-Haloferax_volcanii_42C_rep2-KAS.2x36mers.a.dedup.bam METRICS_FILE=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1527-Haloferax_volcanii_42C_rep2-KAS/L1527-Haloferax_volcanii_42C_rep2-KAS.2x36mers.a.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 25 03:21:12 PDT 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	13392503	1114070	0	967226	202289	0.072221	109282322

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.014416
2.0	1.911831
3.0	2.705741
4.0	3.408082
5.0	4.029417
6.0	4.579088
7.0	5.065362
8.0	5.495549
9.0	5.87612
10.0	6.212796
11.0	6.510641
12.0	6.774133
13.0	7.007234
14.0	7.21345
15.0	7.395882
16.0	7.557272
17.0	7.700047
18.0	7.826356
19.0	7.938096
20.0	8.036948
21.0	8.124399
22.0	8.201763
23.0	8.270205
24.0	8.330752
25.0	8.384316
26.0	8.431702
27.0	8.473623
28.0	8.510709
29.0	8.543517
30.0	8.572541
31.0	8.598218
32.0	8.620933
33.0	8.641028
34.0	8.658806
35.0	8.674533
36.0	8.688446
37.0	8.700754
38.0	8.711643
39.0	8.721276
40.0	8.729798
41.0	8.737337
42.0	8.744006
43.0	8.749906
44.0	8.755126
45.0	8.759744
46.0	8.763829
47.0	8.767443
48.0	8.77064
49.0	8.773468
50.0	8.77597
51.0	8.778184
52.0	8.780142
53.0	8.781874
54.0	8.783407
55.0	8.784763
56.0	8.785962
57.0	8.787023
58.0	8.787962
59.0	8.788792
60.0	8.789527
61.0	8.790177
62.0	8.790752
63.0	8.79126
64.0	8.79171
65.0	8.792108
66.0	8.792461
67.0	8.792772
68.0	8.793048
69.0	8.793292
70.0	8.793507
71.0	8.793698
72.0	8.793867
73.0	8.794016
74.0	8.794148
75.0	8.794265
76.0	8.794369
77.0	8.79446
78.0	8.794541
79.0	8.794613
80.0	8.794676
81.0	8.794732
82.0	8.794782
83.0	8.794825
84.0	8.794864
85.0	8.794899
86.0	8.794929
87.0	8.794956
88.0	8.79498
89.0	8.795001
90.0	8.795019
91.0	8.795036
92.0	8.79505
93.0	8.795063
94.0	8.795074
95.0	8.795085
96.0	8.795093
97.0	8.795101
98.0	8.795108
99.0	8.795114
100.0	8.79512