## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1526-Haloferax_volcanii_42C_rep1-KAS/L1526-Haloferax_volcanii_42C_rep1-KAS.2x36mers.a.bam] OUTPUT=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1526-Haloferax_volcanii_42C_rep1-KAS/L1526-Haloferax_volcanii_42C_rep1-KAS.2x36mers.a.dedup.bam METRICS_FILE=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1526-Haloferax_volcanii_42C_rep1-KAS/L1526-Haloferax_volcanii_42C_rep1-KAS.2x36mers.a.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 25 03:21:05 PDT 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	4390883	386490	0	201150	56162	0.045811	63344688

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.012513
2.0	1.957218
3.0	2.838656
4.0	3.661066
5.0	4.428399
6.0	5.144344
7.0	5.812343
8.0	6.435606
9.0	7.01713
10.0	7.559709
11.0	8.065952
12.0	8.538293
13.0	8.979001
14.0	9.390195
15.0	9.773851
16.0	10.131815
17.0	10.465805
18.0	10.777429
19.0	11.068183
20.0	11.339466
21.0	11.592581
22.0	11.828745
23.0	12.049093
24.0	12.254685
25.0	12.446508
26.0	12.625486
27.0	12.792477
28.0	12.948284
29.0	13.093658
30.0	13.229296
31.0	13.35585
32.0	13.473929
33.0	13.5841
34.0	13.686893
35.0	13.782802
36.0	13.872289
37.0	13.955782
38.0	14.033684
39.0	14.106369
40.0	14.174186
41.0	14.237461
42.0	14.296499
43.0	14.351584
44.0	14.402979
45.0	14.450932
46.0	14.495674
47.0	14.53742
48.0	14.57637
49.0	14.612711
50.0	14.646619
51.0	14.678256
52.0	14.707774
53.0	14.735315
54.0	14.761012
55.0	14.784988
56.0	14.807359
57.0	14.828231
58.0	14.847706
59.0	14.865876
60.0	14.882829
61.0	14.898647
62.0	14.913406
63.0	14.927176
64.0	14.940025
65.0	14.952012
66.0	14.963197
67.0	14.973633
68.0	14.98337
69.0	14.992455
70.0	15.000931
71.0	15.00884
72.0	15.016219
73.0	15.023104
74.0	15.029528
75.0	15.035522
76.0	15.041114
77.0	15.046332
78.0	15.0512
79.0	15.055743
80.0	15.059981
81.0	15.063935
82.0	15.067625
83.0	15.071067
84.0	15.074279
85.0	15.077276
86.0	15.080072
87.0	15.082681
88.0	15.085115
89.0	15.087386
90.0	15.089505
91.0	15.091482
92.0	15.093327
93.0	15.095048
94.0	15.096654
95.0	15.098152
96.0	15.09955
97.0	15.100855
98.0	15.102072
99.0	15.103207
100.0	15.104267