## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L1446-S_crevisiae_KAS-Zymo-reclick.2x36mers.sacCer3.a.bam] OUTPUT=L1446-S_crevisiae_KAS-Zymo-reclick.2x36mers.sacCer3.a.dedup.bam METRICS_FILE=L1446-S_crevisiae_KAS-Zymo-reclick.2x36mers.sacCer3.a.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Fri Feb 14 19:50:34 PST 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	7884350	0	0	5026172	655315	0.637487	3188508

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.021471
2.0	1.107636
3.0	1.114904
4.0	1.115517
5.0	1.115569
6.0	1.115573
7.0	1.115574
8.0	1.115574
9.0	1.115574
10.0	1.115574
11.0	1.115574
12.0	1.115574
13.0	1.115574
14.0	1.115574
15.0	1.115574
16.0	1.115574
17.0	1.115574
18.0	1.115574
19.0	1.115574
20.0	1.115574
21.0	1.115574
22.0	1.115574
23.0	1.115574
24.0	1.115574
25.0	1.115574
26.0	1.115574
27.0	1.115574
28.0	1.115574
29.0	1.115574
30.0	1.115574
31.0	1.115574
32.0	1.115574
33.0	1.115574
34.0	1.115574
35.0	1.115574
36.0	1.115574
37.0	1.115574
38.0	1.115574
39.0	1.115574
40.0	1.115574
41.0	1.115574
42.0	1.115574
43.0	1.115574
44.0	1.115574
45.0	1.115574
46.0	1.115574
47.0	1.115574
48.0	1.115574
49.0	1.115574
50.0	1.115574
51.0	1.115574
52.0	1.115574
53.0	1.115574
54.0	1.115574
55.0	1.115574
56.0	1.115574
57.0	1.115574
58.0	1.115574
59.0	1.115574
60.0	1.115574
61.0	1.115574
62.0	1.115574
63.0	1.115574
64.0	1.115574
65.0	1.115574
66.0	1.115574
67.0	1.115574
68.0	1.115574
69.0	1.115574
70.0	1.115574
71.0	1.115574
72.0	1.115574
73.0	1.115574
74.0	1.115574
75.0	1.115574
76.0	1.115574
77.0	1.115574
78.0	1.115574
79.0	1.115574
80.0	1.115574
81.0	1.115574
82.0	1.115574
83.0	1.115574
84.0	1.115574
85.0	1.115574
86.0	1.115574
87.0	1.115574
88.0	1.115574
89.0	1.115574
90.0	1.115574
91.0	1.115574
92.0	1.115574
93.0	1.115574
94.0	1.115574
95.0	1.115574
96.0	1.115574
97.0	1.115574
98.0	1.115574
99.0	1.115574
100.0	1.115574