## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L1427-Hox_inv_5-1uL_sgRNA-Cas9-CasKAS.2x36mers.mm10.unique.bam] OUTPUT=L1427-Hox_inv_5-1uL_sgRNA-Cas9-CasKAS.2x36mers.mm10.unique.dedup.bam METRICS_FILE=L1427-Hox_inv_5-1uL_sgRNA-Cas9-CasKAS.2x36mers.mm10.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Fri Feb 14 05:40:08 PST 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	33884521	0	0	5120593	597988	0.151119	111128223

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.015367
2.0	1.763882
3.0	2.315678
4.0	2.722455
5.0	3.022325
6.0	3.243386
7.0	3.406349
8.0	3.526483
9.0	3.615044
10.0	3.680331
11.0	3.728459
12.0	3.763938
13.0	3.790093
14.0	3.809375
15.0	3.823588
16.0	3.834067
17.0	3.841791
18.0	3.847485
19.0	3.851683
20.0	3.854778
21.0	3.857059
22.0	3.858741
23.0	3.85998
24.0	3.860894
25.0	3.861568
26.0	3.862065
27.0	3.862431
28.0	3.862701
29.0	3.8629
30.0	3.863046
31.0	3.863155
32.0	3.863234
33.0	3.863293
34.0	3.863336
35.0	3.863368
36.0	3.863392
37.0	3.863409
38.0	3.863422
39.0	3.863431
40.0	3.863438
41.0	3.863443
42.0	3.863447
43.0	3.86345
44.0	3.863452
45.0	3.863454
46.0	3.863455
47.0	3.863456
48.0	3.863456
49.0	3.863457
50.0	3.863457
51.0	3.863457
52.0	3.863457
53.0	3.863457
54.0	3.863458
55.0	3.863458
56.0	3.863458
57.0	3.863458
58.0	3.863458
59.0	3.863458
60.0	3.863458
61.0	3.863458
62.0	3.863458
63.0	3.863458
64.0	3.863458
65.0	3.863458
66.0	3.863458
67.0	3.863458
68.0	3.863458
69.0	3.863458
70.0	3.863458
71.0	3.863458
72.0	3.863458
73.0	3.863458
74.0	3.863458
75.0	3.863458
76.0	3.863458
77.0	3.863458
78.0	3.863458
79.0	3.863458
80.0	3.863458
81.0	3.863458
82.0	3.863458
83.0	3.863458
84.0	3.863458
85.0	3.863458
86.0	3.863458
87.0	3.863458
88.0	3.863458
89.0	3.863458
90.0	3.863458
91.0	3.863458
92.0	3.863458
93.0	3.863458
94.0	3.863458
95.0	3.863458
96.0	3.863458
97.0	3.863458
98.0	3.863458
99.0	3.863458
100.0	3.863458