## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L1339-COLO_HSR_KAS.2x75mers-trim.hg38-female.unique.bam] OUTPUT=L1339-COLO_HSR_KAS.2x75mers-trim.hg38-female.unique.dedup.bam METRICS_FILE=L1339-COLO_HSR_KAS.2x75mers-trim.hg38-female.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Jan 21 20:11:46 PST 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	49874460	0	0	13648445	1419113	0.273656	79053853

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.021033
2.0	1.564342
3.0	1.853446
4.0	2.007283
5.0	2.089142
6.0	2.132701
7.0	2.155879
8.0	2.168213
9.0	2.174776
10.0	2.178268
11.0	2.180126
12.0	2.181115
13.0	2.181641
14.0	2.181921
15.0	2.18207
16.0	2.18215
17.0	2.182192
18.0	2.182214
19.0	2.182226
20.0	2.182233
21.0	2.182236
22.0	2.182238
23.0	2.182239
24.0	2.182239
25.0	2.18224
26.0	2.18224
27.0	2.18224
28.0	2.18224
29.0	2.18224
30.0	2.18224
31.0	2.18224
32.0	2.18224
33.0	2.18224
34.0	2.18224
35.0	2.18224
36.0	2.18224
37.0	2.18224
38.0	2.18224
39.0	2.18224
40.0	2.18224
41.0	2.18224
42.0	2.18224
43.0	2.18224
44.0	2.18224
45.0	2.18224
46.0	2.18224
47.0	2.18224
48.0	2.18224
49.0	2.18224
50.0	2.18224
51.0	2.18224
52.0	2.18224
53.0	2.18224
54.0	2.18224
55.0	2.18224
56.0	2.18224
57.0	2.18224
58.0	2.18224
59.0	2.18224
60.0	2.18224
61.0	2.18224
62.0	2.18224
63.0	2.18224
64.0	2.18224
65.0	2.18224
66.0	2.18224
67.0	2.18224
68.0	2.18224
69.0	2.18224
70.0	2.18224
71.0	2.18224
72.0	2.18224
73.0	2.18224
74.0	2.18224
75.0	2.18224
76.0	2.18224
77.0	2.18224
78.0	2.18224
79.0	2.18224
80.0	2.18224
81.0	2.18224
82.0	2.18224
83.0	2.18224
84.0	2.18224
85.0	2.18224
86.0	2.18224
87.0	2.18224
88.0	2.18224
89.0	2.18224
90.0	2.18224
91.0	2.18224
92.0	2.18224
93.0	2.18224
94.0	2.18224
95.0	2.18224
96.0	2.18224
97.0	2.18224
98.0	2.18224
99.0	2.18224
100.0	2.18224