## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L1338-COLO_DM_KAS.2x75mers-trim.hg19-female.unique.bam] OUTPUT=L1338-COLO_DM_KAS.2x75mers-trim.hg19-female.unique.dedup.bam METRICS_FILE=L1338-COLO_DM_KAS.2x75mers-trim.hg19-female.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jan 25 09:02:00 PST 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	16536539	0	0	2234686	276489	0.135136	61971923

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.014838
2.0	1.791997
3.0	2.387142
4.0	2.842902
5.0	3.191921
6.0	3.459199
7.0	3.663879
8.0	3.820622
9.0	3.940656
10.0	4.032577
11.0	4.10297
12.0	4.156876
13.0	4.198158
14.0	4.229771
15.0	4.25398
16.0	4.27252
17.0	4.286717
18.0	4.297589
19.0	4.305915
20.0	4.312291
21.0	4.317174
22.0	4.320913
23.0	4.323777
24.0	4.325969
25.0	4.327649
26.0	4.328935
27.0	4.329919
28.0	4.330674
29.0	4.331251
30.0	4.331693
31.0	4.332032
32.0	4.332291
33.0	4.33249
34.0	4.332642
35.0	4.332759
36.0	4.332848
37.0	4.332916
38.0	4.332968
39.0	4.333008
40.0	4.333039
41.0	4.333063
42.0	4.333081
43.0	4.333094
44.0	4.333105
45.0	4.333113
46.0	4.333119
47.0	4.333124
48.0	4.333128
49.0	4.33313
50.0	4.333132
51.0	4.333134
52.0	4.333135
53.0	4.333136
54.0	4.333137
55.0	4.333138
56.0	4.333138
57.0	4.333138
58.0	4.333139
59.0	4.333139
60.0	4.333139
61.0	4.333139
62.0	4.333139
63.0	4.333139
64.0	4.333139
65.0	4.333139
66.0	4.333139
67.0	4.333139
68.0	4.333139
69.0	4.333139
70.0	4.333139
71.0	4.333139
72.0	4.333139
73.0	4.333139
74.0	4.333139
75.0	4.333139
76.0	4.333139
77.0	4.333139
78.0	4.333139
79.0	4.333139
80.0	4.333139
81.0	4.333139
82.0	4.333139
83.0	4.333139
84.0	4.333139
85.0	4.333139
86.0	4.333139
87.0	4.333139
88.0	4.333139
89.0	4.333139
90.0	4.333139
91.0	4.333139
92.0	4.333139
93.0	4.333139
94.0	4.333139
95.0	4.333139
96.0	4.333139
97.0	4.333139
98.0	4.333139
99.0	4.333139
100.0	4.333139