## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L1319-Eyal_D2_KAS_post-click.2x36mers.hg38-female.unique.bam] OUTPUT=L1319-Eyal_D2_KAS_post-click.2x36mers.hg38-female.unique.dedup.bam METRICS_FILE=L1319-Eyal_D2_KAS_post-click.2x36mers.hg38-female.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jan 11 22:55:12 PST 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	10155966	0	0	3624765	386276	0.35691	11258678

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.024413
2.0	1.440052
3.0	1.608691
4.0	1.677114
5.0	1.704876
6.0	1.716139
7.0	1.720709
8.0	1.722564
9.0	1.723316
10.0	1.723621
11.0	1.723745
12.0	1.723795
13.0	1.723816
14.0	1.723824
15.0	1.723827
16.0	1.723829
17.0	1.723829
18.0	1.72383
19.0	1.72383
20.0	1.72383
21.0	1.72383
22.0	1.72383
23.0	1.72383
24.0	1.72383
25.0	1.72383
26.0	1.72383
27.0	1.72383
28.0	1.72383
29.0	1.72383
30.0	1.72383
31.0	1.72383
32.0	1.72383
33.0	1.72383
34.0	1.72383
35.0	1.72383
36.0	1.72383
37.0	1.72383
38.0	1.72383
39.0	1.72383
40.0	1.72383
41.0	1.72383
42.0	1.72383
43.0	1.72383
44.0	1.72383
45.0	1.72383
46.0	1.72383
47.0	1.72383
48.0	1.72383
49.0	1.72383
50.0	1.72383
51.0	1.72383
52.0	1.72383
53.0	1.72383
54.0	1.72383
55.0	1.72383
56.0	1.72383
57.0	1.72383
58.0	1.72383
59.0	1.72383
60.0	1.72383
61.0	1.72383
62.0	1.72383
63.0	1.72383
64.0	1.72383
65.0	1.72383
66.0	1.72383
67.0	1.72383
68.0	1.72383
69.0	1.72383
70.0	1.72383
71.0	1.72383
72.0	1.72383
73.0	1.72383
74.0	1.72383
75.0	1.72383
76.0	1.72383
77.0	1.72383
78.0	1.72383
79.0	1.72383
80.0	1.72383
81.0	1.72383
82.0	1.72383
83.0	1.72383
84.0	1.72383
85.0	1.72383
86.0	1.72383
87.0	1.72383
88.0	1.72383
89.0	1.72383
90.0	1.72383
91.0	1.72383
92.0	1.72383
93.0	1.72383
94.0	1.72383
95.0	1.72383
96.0	1.72383
97.0	1.72383
98.0	1.72383
99.0	1.72383
100.0	1.72383