## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L1317-Eyal_C2_KAS_post-click.2x36mers.hg38-female.unique.bam] OUTPUT=L1317-Eyal_C2_KAS_post-click.2x36mers.hg38-female.unique.dedup.bam METRICS_FILE=L1317-Eyal_C2_KAS_post-click.2x36mers.hg38-female.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jan 11 22:55:12 PST 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	1647795	0	0	144394	25187	0.087629	10495448

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.014336
2.0	1.881293
3.0	2.622284
4.0	3.255611
5.0	3.796917
6.0	4.259574
7.0	4.655008
8.0	4.992987
9.0	5.281859
10.0	5.528758
11.0	5.739784
12.0	5.920149
13.0	6.074307
14.0	6.206066
15.0	6.318681
16.0	6.414934
17.0	6.497201
18.0	6.567516
19.0	6.627613
20.0	6.678979
21.0	6.722882
22.0	6.760405
23.0	6.792477
24.0	6.819889
25.0	6.843317
26.0	6.863342
27.0	6.880457
28.0	6.895086
29.0	6.907589
30.0	6.918275
31.0	6.927409
32.0	6.935215
33.0	6.941887
34.0	6.94759
35.0	6.952464
36.0	6.95663
37.0	6.960191
38.0	6.963234
39.0	6.965836
40.0	6.968059
41.0	6.969959
42.0	6.971583
43.0	6.972971
44.0	6.974158
45.0	6.975172
46.0	6.976038
47.0	6.976779
48.0	6.977412
49.0	6.977953
50.0	6.978416
51.0	6.978811
52.0	6.979149
53.0	6.979438
54.0	6.979685
55.0	6.979896
56.0	6.980076
57.0	6.98023
58.0	6.980362
59.0	6.980475
60.0	6.980571
61.0	6.980653
62.0	6.980723
63.0	6.980783
64.0	6.980835
65.0	6.980879
66.0	6.980916
67.0	6.980948
68.0	6.980976
69.0	6.980999
70.0	6.981019
71.0	6.981036
72.0	6.981051
73.0	6.981063
74.0	6.981074
75.0	6.981083
76.0	6.981091
77.0	6.981098
78.0	6.981103
79.0	6.981108
80.0	6.981112
81.0	6.981116
82.0	6.981119
83.0	6.981121
84.0	6.981124
85.0	6.981126
86.0	6.981127
87.0	6.981129
88.0	6.98113
89.0	6.981131
90.0	6.981132
91.0	6.981132
92.0	6.981133
93.0	6.981134
94.0	6.981134
95.0	6.981134
96.0	6.981135
97.0	6.981135
98.0	6.981135
99.0	6.981136
100.0	6.981136