Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2019/2019-08-05-NextSeq-run/juicer-L856-Apo-on_beads_PCR -d /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2019/2019-08-05-NextSeq-run/juicer-L856-Apo-on_beads_PCR -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/GCA_001417965.1_Aiptasia_genome_1.1_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/Aiptasia_pallida-1.1_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa                                                                                                                                                                                                                            
Sequenced Read Pairs:  212,739,463
 Normal Paired: 135,239,465 (63.57%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 77,499,998 (36.43%)
 Ligation Motif Present: 136,159 (0.06%)
Alignable (Normal+Chimeric Paired): 135,239,465 (63.57%)
Unique Reads: 107,000,884 (50.30%)
PCR Duplicates: 28,224,703 (13.27%)
Optical Duplicates: 13,878 (0.01%)
Library Complexity Estimate: 277,088,821
Intra-fragment Reads: 42,262,184 (19.87% / 39.50%)
Below MAPQ Threshold: 34,066,853 (16.01% / 31.84%)
Hi-C Contacts: 30,671,847 (14.42% / 28.67%)
 Ligation Motif Present: 45,907  (0.02% / 0.04%)
 3' Bias (Long Range): 49% - 51%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 7,504,159  (3.53% / 7.01%)
Intra-chromosomal: 23,167,688  (10.89% / 21.65%)
Short Range (<20Kb): 21,712,220  (10.21% / 20.29%)
Long Range (>20Kb): 1,455,201  (0.68% / 1.36%)