Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L856+L857 -d /srv/scratch/marinovg/juicer-L856+L857 -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/GCA_001417965.1_Aiptasia_genome_1.1_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/Aiptasia_pallida-1.1_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  545,744,282
 Normal Paired: 342,176,707 (62.70%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 203,567,575 (37.30%)
 Ligation Motif Present: 347,828 (0.06%)
Alignable (Normal+Chimeric Paired): 342,176,707 (62.70%)
Unique Reads: 204,489,702 (37.47%)
PCR Duplicates: 137,626,095 (25.22%)
Optical Duplicates: 60,910 (0.01%)
Library Complexity Estimate: 301,265,291
Intra-fragment Reads: 81,884,000 (15.00% / 40.04%)
Below MAPQ Threshold: 57,007,586 (10.45% / 27.88%)
Hi-C Contacts: 65,598,116 (12.02% / 32.08%)
 Ligation Motif Present: 92,415  (0.02% / 0.05%)
 3' Bias (Long Range): 49% - 51%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 16,970,288  (3.11% / 8.30%)
Intra-chromosomal: 48,627,828  (8.91% / 23.78%)
Short Range (<20Kb): 45,161,242  (8.28% / 22.08%)
Long Range (>20Kb): 3,466,016  (0.64% / 1.69%)