Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/juicer-L534-Symbiodinium_34C_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/juicer-L534-Symbiodinium_34C_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/bwa-indexes/symbB.v1.0.genome.fa                                                                                                                                                                                                                                                
Sequenced Read Pairs:  450,233,968
 Normal Paired: 252,573,614 (56.10%)
 Chimeric Paired: 4,394,028 (0.98%)
 Chimeric Ambiguous: 1,144,810 (0.25%)
 Unmapped: 192,121,516 (42.67%)
 Ligation Motif Present: 108,051,712 (24.00%)
Alignable (Normal+Chimeric Paired): 256,967,642 (57.07%)
Unique Reads: 246,100,568 (54.66%)
PCR Duplicates: 10,791,988 (2.40%)
Optical Duplicates: 75,086 (0.02%)
Library Complexity Estimate: 2,971,291,849
Intra-fragment Reads: 7,962,341 (1.77% / 3.24%)
Below MAPQ Threshold: 72,906,262 (16.19% / 29.62%)
Hi-C Contacts: 165,231,965 (36.70% / 67.14%)
 Ligation Motif Present: 18,734,976  (4.16% / 7.61%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 146,929,323  (32.63% / 59.70%)
Intra-chromosomal: 18,302,642  (4.07% / 7.44%)
Short Range (<20Kb): 14,971,285  (3.33% / 6.08%)
Long Range (>20Kb): 3,331,215  (0.74% / 1.35%)