Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -S final -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/juicer-L534-Symbiodinium_34C-symbB.v1.0.genome.FINAL-final-post-review -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/juicer-L534-Symbiodinium_34C-symbB.v1.0.genome.FINAL-final-post-review -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review/symbB.v1.0.genome.FINAL.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review/symbB.v1.0.genome.FINAL_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review/bwa-indexes/symbB.v1.0.genome.FINAL.fasta                                                                                                                                                                         
Sequenced Read Pairs:  450,233,968
 Normal Paired: 252,525,927 (56.09%)
 Chimeric Paired: 4,348,646 (0.97%)
 Chimeric Ambiguous: 1,192,593 (0.26%)
 Unmapped: 192,166,802 (42.68%)
 Ligation Motif Present: 108,051,712 (24.00%)
Alignable (Normal+Chimeric Paired): 256,874,573 (57.05%)
Unique Reads: 246,012,391 (54.64%)
PCR Duplicates: 10,787,084 (2.40%)
Optical Duplicates: 75,098 (0.02%)
Library Complexity Estimate: 2,970,496,860
Intra-fragment Reads: 7,960,456 (1.77% / 3.24%)
Below MAPQ Threshold: 72,852,131 (16.18% / 29.61%)
Hi-C Contacts: 165,199,804 (36.69% / 67.15%)
 Ligation Motif Present: 18,716,473  (4.16% / 7.61%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 107,977,769  (23.98% / 43.89%)
Intra-chromosomal: 57,222,035  (12.71% / 23.26%)
Short Range (<20Kb): 15,152,417  (3.37% / 6.16%)
Long Range (>20Kb): 42,069,465  (9.34% / 17.10%)