export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/juicer-L533-Symbiodinium_27C_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/juicer-L533-Symbiodinium_27C_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/bwa-indexes/symbB.v1.0.genome.fa