Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/juicer-L533-Symbiodinium_27C_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/juicer-L533-Symbiodinium_27C_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/bwa-indexes/symbB.v1.0.genome.fa                                                                                                                                                                                                                                                
Sequenced Read Pairs:  456,598,476
 Normal Paired: 246,848,058 (54.06%)
 Chimeric Paired: 2,833,904 (0.62%)
 Chimeric Ambiguous: 759,036 (0.17%)
 Unmapped: 206,157,478 (45.15%)
 Ligation Motif Present: 96,090,206 (21.04%)
Alignable (Normal+Chimeric Paired): 249,681,962 (54.68%)
Unique Reads: 230,122,075 (50.40%)
PCR Duplicates: 19,501,665 (4.27%)
Optical Duplicates: 58,222 (0.01%)
Library Complexity Estimate: 1,513,268,498
Intra-fragment Reads: 9,332,797 (2.04% / 4.06%)
Below MAPQ Threshold: 69,170,859 (15.15% / 30.06%)
Hi-C Contacts: 151,618,419 (33.21% / 65.89%)
 Ligation Motif Present: 13,506,926  (2.96% / 5.87%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 132,279,856  (28.97% / 57.48%)
Intra-chromosomal: 19,338,563  (4.24% / 8.40%)
Short Range (<20Kb): 15,778,882  (3.46% / 6.86%)
Long Range (>20Kb): 3,559,387  (0.78% / 1.55%)