Experiment description: Juicer version 1.5.6; BWA 0.7.12-r1039; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L533-Symbiodinium_27C-symbB.v1.0.genome.FINAL-final-post-review -d /srv/scratch/marinovg/juicer-L533-Symbiodinium_27C-symbB.v1.0.genome.FINAL-final-post-review -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review/symbB.v1.0.genome.FINAL.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review/symbB.v1.0.genome.FINAL_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review/bwa-indexes/symbB.v1.0.genome.FINAL.fasta                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  456,598,476
 Normal Paired: 246,802,505 (54.05%)
 Chimeric Paired: 2,804,942 (0.61%)
 Chimeric Ambiguous: 789,550 (0.17%)
 Unmapped: 206,201,479 (45.16%)
 Ligation Motif Present: 96,090,206 (21.04%)
Alignable (Normal+Chimeric Paired): 249,607,447 (54.67%)
Unique Reads: 230,053,470 (50.38%)
PCR Duplicates: 19,495,812 (4.27%)
Optical Duplicates: 58,165 (0.01%)
Library Complexity Estimate: 1,512,820,072
Intra-fragment Reads: 9,330,745 (2.04% / 4.06%)
Below MAPQ Threshold: 90,373,567 (19.79% / 39.28%)
Hi-C Contacts: 130,349,158 (28.55% / 56.66%)
 Ligation Motif Present: 11,683,476  (2.56% / 5.08%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 72,960,528  (15.98% / 31.71%)
Intra-chromosomal: 57,388,630  (12.57% / 24.95%)
Short Range (<20Kb): 14,722,992  (3.22% / 6.40%)
Long Range (>20Kb): 42,665,389  (9.34% / 18.55%)