Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-09-26-Novogene-NovaSeq/juicer-reoriented-rerun-L2876-LB_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-09-26-Novogene-NovaSeq/juicer-reoriented-rerun-L2876-LB_Hi-C -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L2786-bdellovibrio_bacteriovorus-ICPB_3264_gDNA_cloudy/SPAdes-3.15.4-2023-04-19-B_b_gDNA_check.pass-V2/scaffolds_reoriented.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L2786-bdellovibrio_bacteriovorus-ICPB_3264_gDNA_cloudy/SPAdes-3.15.4-2023-04-19-B_b_gDNA_check.pass-V2/bwa-indexes-reoriented/scaffolds_reoriented.fa                                                                                                                                                                                                        
Sequenced Read Pairs:  70,511,118
 Normal Paired: 25,676,348 (36.41%)
 Chimeric Paired: 13,748,531 (19.50%)
 Chimeric Ambiguous: 10,955,765 (15.54%)
 Unmapped: 20,130,474 (28.55%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 39,424,879 (55.91%)
Unique Reads: 16,245,267 (23.04%)
PCR Duplicates: 8,797,012 (12.48%)
Optical Duplicates: 1,385,299 (1.96%)
Library Complexity Estimate: 26,686,828
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 78,571 (0.11% / 0.48%)
Hi-C Contacts: 16,166,696 (22.93% / 99.52%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 0% - 37% - 22% - 40%
Inter-chromosomal: 0  (0.00% / 0.00%)
Intra-chromosomal: 16,166,696  (22.93% / 99.52%)
Short Range (<20Kb): 4,712,097  (6.68% / 29.01%)
Long Range (>20Kb): 11,453,277  (16.24% / 70.50%)