Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-09-26-Novogene-NovaSeq/juicer-reoriented-rerun-L2875-LB_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-09-26-Novogene-NovaSeq/juicer-reoriented-rerun-L2875-LB_Hi-C -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L2786-bdellovibrio_bacteriovorus-ICPB_3264_gDNA_cloudy/SPAdes-3.15.4-2023-04-19-B_b_gDNA_check.pass-V2/scaffolds_reoriented.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L2786-bdellovibrio_bacteriovorus-ICPB_3264_gDNA_cloudy/SPAdes-3.15.4-2023-04-19-B_b_gDNA_check.pass-V2/bwa-indexes-reoriented/scaffolds_reoriented.fa                                                                                                                                                                                                        
Sequenced Read Pairs:  44,698,509
 Normal Paired: 34,222,978 (76.56%)
 Chimeric Paired: 3,618,753 (8.10%)
 Chimeric Ambiguous: 1,497,537 (3.35%)
 Unmapped: 5,359,241 (11.99%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 37,841,731 (84.66%)
Unique Reads: 12,120,402 (27.12%)
PCR Duplicates: 24,769,088 (55.41%)
Optical Duplicates: 952,241 (2.13%)
Library Complexity Estimate: 12,847,972
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 39,910 (0.09% / 0.33%)
Hi-C Contacts: 12,080,492 (27.03% / 99.67%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 0  (0.00% / 0.00%)
Intra-chromosomal: 12,080,492  (27.03% / 99.67%)
Short Range (<20Kb): 6,734,482  (15.07% / 55.56%)
Long Range (>20Kb): 5,345,272  (11.96% / 44.10%)