Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-09-26-Novogene-NovaSeq/juicer-reoriented-rerun-L2873-HEPES_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-09-26-Novogene-NovaSeq/juicer-reoriented-rerun-L2873-HEPES_Hi-C -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L2786-bdellovibrio_bacteriovorus-ICPB_3264_gDNA_cloudy/SPAdes-3.15.4-2023-04-19-B_b_gDNA_check.pass-V2/scaffolds_reoriented.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L2786-bdellovibrio_bacteriovorus-ICPB_3264_gDNA_cloudy/SPAdes-3.15.4-2023-04-19-B_b_gDNA_check.pass-V2/bwa-indexes-reoriented/scaffolds_reoriented.fa                                                                                                                                                                                                  
Sequenced Read Pairs:  47,694,626
 Normal Paired: 23,197,234 (48.64%)
 Chimeric Paired: 12,271,126 (25.73%)
 Chimeric Ambiguous: 9,124,130 (19.13%)
 Unmapped: 3,102,136 (6.50%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 35,468,360 (74.37%)
Unique Reads: 20,807,174 (43.63%)
PCR Duplicates: 13,028,428 (27.32%)
Optical Duplicates: 1,632,758 (3.42%)
Library Complexity Estimate: 31,731,812
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 89,478 (0.19% / 0.43%)
Hi-C Contacts: 20,717,696 (43.44% / 99.57%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 0  (0.00% / 0.00%)
Intra-chromosomal: 20,717,696  (43.44% / 99.57%)
Short Range (<20Kb): 4,565,519  (9.57% / 21.94%)
Long Range (>20Kb): 16,151,078  (33.86% / 77.62%)