Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-09-26-Novogene-NovaSeq/juicer-reoriented-rerun-L2872-LB_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-09-26-Novogene-NovaSeq/juicer-reoriented-rerun-L2872-LB_Hi-C -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L2786-bdellovibrio_bacteriovorus-ICPB_3264_gDNA_cloudy/SPAdes-3.15.4-2023-04-19-B_b_gDNA_check.pass-V2/scaffolds_reoriented.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L2786-bdellovibrio_bacteriovorus-ICPB_3264_gDNA_cloudy/SPAdes-3.15.4-2023-04-19-B_b_gDNA_check.pass-V2/bwa-indexes-reoriented/scaffolds_reoriented.fa                                                                                                                                                                                                        
Sequenced Read Pairs:  38,876,443
 Normal Paired: 18,025,156 (46.37%)
 Chimeric Paired: 9,549,341 (24.56%)
 Chimeric Ambiguous: 9,127,486 (23.48%)
 Unmapped: 2,174,460 (5.59%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 27,574,497 (70.93%)
Unique Reads: 16,968,728 (43.65%)
PCR Duplicates: 9,395,727 (24.17%)
Optical Duplicates: 1,210,042 (3.11%)
Library Complexity Estimate: 27,547,843
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 57,213 (0.15% / 0.34%)
Hi-C Contacts: 16,911,515 (43.50% / 99.66%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 0  (0.00% / 0.00%)
Intra-chromosomal: 16,911,515  (43.50% / 99.66%)
Short Range (<20Kb): 5,196,690  (13.37% / 30.63%)
Long Range (>20Kb): 11,712,900  (30.13% / 69.03%)