Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-09-26-Novogene-NovaSeq/juicer-reoriented-rerun-L2871-LB_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-09-26-Novogene-NovaSeq/juicer-reoriented-rerun-L2871-LB_Hi-C -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L2786-bdellovibrio_bacteriovorus-ICPB_3264_gDNA_cloudy/SPAdes-3.15.4-2023-04-19-B_b_gDNA_check.pass-V2/scaffolds_reoriented.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L2786-bdellovibrio_bacteriovorus-ICPB_3264_gDNA_cloudy/SPAdes-3.15.4-2023-04-19-B_b_gDNA_check.pass-V2/bwa-indexes-reoriented/scaffolds_reoriented.fa                                                                                                                                                                                                        
Sequenced Read Pairs:  34,299,529
 Normal Paired: 15,668,554 (45.68%)
 Chimeric Paired: 7,559,069 (22.04%)
 Chimeric Ambiguous: 5,986,862 (17.45%)
 Unmapped: 5,085,044 (14.83%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 23,227,623 (67.72%)
Unique Reads: 14,631,840 (42.66%)
PCR Duplicates: 7,698,850 (22.45%)
Optical Duplicates: 896,933 (2.62%)
Library Complexity Estimate: 24,411,018
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 58,359 (0.17% / 0.40%)
Hi-C Contacts: 14,573,481 (42.49% / 99.60%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 0  (0.00% / 0.00%)
Intra-chromosomal: 14,573,481  (42.49% / 99.60%)
Short Range (<20Kb): 5,042,166  (14.70% / 34.46%)
Long Range (>20Kb): 9,529,901  (27.78% / 65.13%)