Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-09-26-Novogene-NovaSeq/juicer-reoriented-rerun-L2870-HEPES_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-09-26-Novogene-NovaSeq/juicer-reoriented-rerun-L2870-HEPES_Hi-C -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L2786-bdellovibrio_bacteriovorus-ICPB_3264_gDNA_cloudy/SPAdes-3.15.4-2023-04-19-B_b_gDNA_check.pass-V2/scaffolds_reoriented.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L2786-bdellovibrio_bacteriovorus-ICPB_3264_gDNA_cloudy/SPAdes-3.15.4-2023-04-19-B_b_gDNA_check.pass-V2/bwa-indexes-reoriented/scaffolds_reoriented.fa                                                                                                                                                                                                  
Sequenced Read Pairs:  54,690,701
 Normal Paired: 34,374,566 (62.85%)
 Chimeric Paired: 8,705,989 (15.92%)
 Chimeric Ambiguous: 4,325,927 (7.91%)
 Unmapped: 7,284,219 (13.32%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 43,080,555 (78.77%)
Unique Reads: 19,485,687 (35.63%)
PCR Duplicates: 21,788,643 (39.84%)
Optical Duplicates: 1,806,225 (3.30%)
Library Complexity Estimate: 23,583,170
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 65,735 (0.12% / 0.34%)
Hi-C Contacts: 19,419,952 (35.51% / 99.66%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 0  (0.00% / 0.00%)
Intra-chromosomal: 19,419,952  (35.51% / 99.66%)
Short Range (<20Kb): 5,653,852  (10.34% / 29.02%)
Long Range (>20Kb): 13,765,255  (25.17% / 70.64%)