Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2262-PSS085_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2262-PSS085_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  879,202,248
 Normal Paired: 565,793,654 (64.35%)
 Chimeric Paired: 173,648,926 (19.75%)
 Chimeric Ambiguous: 136,566,643 (15.53%)
 Unmapped: 3,193,025 (0.36%)
 Ligation Motif Present: 337,875,443 (38.43%)
Alignable (Normal+Chimeric Paired): 739,442,580 (84.10%)
Unique Reads: 410,052,789 (46.64%)
PCR Duplicates: 324,700,710 (36.93%)
Optical Duplicates: 4,689,081 (0.53%)
Library Complexity Estimate: 562,233,882
Intra-fragment Reads: 52,273,110 (5.95% / 12.75%)
Below MAPQ Threshold: 69,331,208 (7.89% / 16.91%)
Hi-C Contacts: 288,448,471 (32.81% / 70.34%)
 Ligation Motif Present: 91,109,422  (10.36% / 22.22%)
 3' Bias (Long Range): 65% - 35%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 27,149,997  (3.09% / 6.62%)
Intra-chromosomal: 261,298,474  (29.72% / 63.72%)
Short Range (<20Kb): 199,879,911  (22.73% / 48.74%)
Long Range (>20Kb): 61,418,033  (6.99% / 14.98%)