Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2260-PSS0141-Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2260-PSS0141-Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  537,380,568
 Normal Paired: 493,012,988 (91.74%)
 Chimeric Paired: 21,713,603 (4.04%)
 Chimeric Ambiguous: 20,378,406 (3.79%)
 Unmapped: 2,275,571 (0.42%)
 Ligation Motif Present: 7,013,217 (1.31%)
Alignable (Normal+Chimeric Paired): 514,726,591 (95.78%)
Unique Reads: 290,322,786 (54.03%)
PCR Duplicates: 221,313,537 (41.18%)
Optical Duplicates: 3,090,268 (0.58%)
Library Complexity Estimate: 404,512,304
Intra-fragment Reads: 46,439,529 (8.64% / 16.00%)
Below MAPQ Threshold: 37,234,528 (6.93% / 12.83%)
Hi-C Contacts: 206,648,729 (38.45% / 71.18%)
 Ligation Motif Present: 2,240,565  (0.42% / 0.77%)
 3' Bias (Long Range): 53% - 47%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 51,286,421  (9.54% / 17.67%)
Intra-chromosomal: 155,362,308  (28.91% / 53.51%)
Short Range (<20Kb): 150,828,627  (28.07% / 51.95%)
Long Range (>20Kb): 4,533,636  (0.84% / 1.56%)