Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2259-OS89_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2259-OS89_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  345,969,259
 Normal Paired: 283,848,940 (82.04%)
 Chimeric Paired: 36,446,522 (10.53%)
 Chimeric Ambiguous: 24,578,434 (7.10%)
 Unmapped: 1,095,363 (0.32%)
 Ligation Motif Present: 50,441,811 (14.58%)
Alignable (Normal+Chimeric Paired): 320,295,462 (92.58%)
Unique Reads: 184,078,027 (53.21%)
PCR Duplicates: 134,420,394 (38.85%)
Optical Duplicates: 1,797,041 (0.52%)
Library Complexity Estimate: 261,319,229
Intra-fragment Reads: 46,126,869 (13.33% / 25.06%)
Below MAPQ Threshold: 24,471,441 (7.07% / 13.29%)
Hi-C Contacts: 113,479,717 (32.80% / 61.65%)
 Ligation Motif Present: 14,802,194  (4.28% / 8.04%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 5,959,274  (1.72% / 3.24%)
Intra-chromosomal: 107,520,443  (31.08% / 58.41%)
Short Range (<20Kb): 96,187,867  (27.80% / 52.25%)
Long Range (>20Kb): 11,332,342  (3.28% / 6.16%)