Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2259-OS89_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2259-OS89_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  345,969,259
 Normal Paired: 283,848,940 (82.04%)
 Chimeric Paired: 36,446,522 (10.53%)
 Chimeric Ambiguous: 24,578,434 (7.10%)
 Unmapped: 1,095,363 (0.32%)
 Ligation Motif Present: 50,441,811 (14.58%)
Alignable (Normal+Chimeric Paired): 320,295,462 (92.58%)
Unique Reads: 184,078,027 (53.21%)
PCR Duplicates: 134,420,394 (38.85%)
Optical Duplicates: 1,797,041 (0.52%)
Library Complexity Estimate: 261,319,229
Intra-fragment Reads: 46,126,869 (13.33% / 25.06%)
Below MAPQ Threshold: 13,925,033 (4.02% / 7.56%)
Hi-C Contacts: 124,026,125 (35.85% / 67.38%)
 Ligation Motif Present: 16,467,696  (4.76% / 8.95%)
 3' Bias (Long Range): 52% - 48%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 7,894,708  (2.28% / 4.29%)
Intra-chromosomal: 116,131,417  (33.57% / 63.09%)
Short Range (<20Kb): 102,605,351  (29.66% / 55.74%)
Long Range (>20Kb): 13,525,749  (3.91% / 7.35%)