Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2258-OS89_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2258-OS89_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  426,099,994
 Normal Paired: 351,526,513 (82.50%)
 Chimeric Paired: 46,340,392 (10.88%)
 Chimeric Ambiguous: 26,793,511 (6.29%)
 Unmapped: 1,439,578 (0.34%)
 Ligation Motif Present: 59,213,441 (13.90%)
Alignable (Normal+Chimeric Paired): 397,866,905 (93.37%)
Unique Reads: 215,063,120 (50.47%)
PCR Duplicates: 180,078,104 (42.26%)
Optical Duplicates: 2,725,681 (0.64%)
Library Complexity Estimate: 288,247,022
Intra-fragment Reads: 52,688,210 (12.37% / 24.50%)
Below MAPQ Threshold: 28,607,100 (6.71% / 13.30%)
Hi-C Contacts: 133,767,810 (31.39% / 62.20%)
 Ligation Motif Present: 16,925,489  (3.97% / 7.87%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 7,481,354  (1.76% / 3.48%)
Intra-chromosomal: 126,286,456  (29.64% / 58.72%)
Short Range (<20Kb): 112,133,704  (26.32% / 52.14%)
Long Range (>20Kb): 14,152,464  (3.32% / 6.58%)