Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2257-OS08_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2257-OS08_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  571,445,456
 Normal Paired: 263,295,275 (46.08%)
 Chimeric Paired: 187,326,867 (32.78%)
 Chimeric Ambiguous: 118,276,843 (20.70%)
 Unmapped: 2,546,471 (0.45%)
 Ligation Motif Present: 450,373,450 (78.81%)
Alignable (Normal+Chimeric Paired): 450,622,142 (78.86%)
Unique Reads: 319,026,585 (55.83%)
PCR Duplicates: 127,374,080 (22.29%)
Optical Duplicates: 4,221,477 (0.74%)
Library Complexity Estimate: 625,023,536
Intra-fragment Reads: 4,495,802 (0.79% / 1.41%)
Below MAPQ Threshold: 59,626,690 (10.43% / 18.69%)
Hi-C Contacts: 254,904,093 (44.61% / 79.90%)
 Ligation Motif Present: 142,927,187  (25.01% / 44.80%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 26,806,483  (4.69% / 8.40%)
Intra-chromosomal: 228,097,610  (39.92% / 71.50%)
Short Range (<20Kb): 147,866,012  (25.88% / 46.35%)
Long Range (>20Kb): 80,231,535  (14.04% / 25.15%)