Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-05-29-NextSeq-run/juicer-L2118-PSS0141-Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-05-29-NextSeq-run/juicer-L2118-PSS0141-Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  240,646,783
 Normal Paired: 155,272,547 (64.52%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 85,374,236 (35.48%)
 Ligation Motif Present: 67,773,807 (28.16%)
Alignable (Normal+Chimeric Paired): 155,272,547 (64.52%)
Unique Reads: 150,672,397 (62.61%)
PCR Duplicates: 4,494,897 (1.87%)
Optical Duplicates: 105,253 (0.04%)
Library Complexity Estimate: 2,626,270,953
Intra-fragment Reads: 1,952,370 (0.81% / 1.30%)
Below MAPQ Threshold: 84,569,525 (35.14% / 56.13%)
Hi-C Contacts: 64,150,502 (26.66% / 42.58%)
 Ligation Motif Present: 6,171,307  (2.56% / 4.10%)
 3' Bias (Long Range): 86% - 14%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,366,570  (4.31% / 6.88%)
Intra-chromosomal: 53,783,932  (22.35% / 35.70%)
Short Range (<20Kb): 18,688,310  (7.77% / 12.40%)
Long Range (>20Kb): 35,095,593  (14.58% / 23.29%)