Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-05-29-NextSeq-run/juicer-L2118-PSS0141-Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-05-29-NextSeq-run/juicer-L2118-PSS0141-Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  240,646,783
 Normal Paired: 155,272,547 (64.52%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 85,374,236 (35.48%)
 Ligation Motif Present: 67,773,807 (28.16%)
Alignable (Normal+Chimeric Paired): 155,272,547 (64.52%)
Unique Reads: 150,672,397 (62.61%)
PCR Duplicates: 4,494,897 (1.87%)
Optical Duplicates: 105,253 (0.04%)
Library Complexity Estimate: 2,626,270,953
Intra-fragment Reads: 1,952,370 (0.81% / 1.30%)
Below MAPQ Threshold: 60,905,659 (25.31% / 40.42%)
Hi-C Contacts: 87,814,368 (36.49% / 58.28%)
 Ligation Motif Present: 8,444,728  (3.51% / 5.60%)
 3' Bias (Long Range): 85% - 15%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 16,127,892  (6.70% / 10.70%)
Intra-chromosomal: 71,686,476  (29.79% / 47.58%)
Short Range (<20Kb): 24,247,154  (10.08% / 16.09%)
Long Range (>20Kb): 47,439,280  (19.71% / 31.49%)