Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2118-PSS0141-Hi-C-all_reads -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2118-PSS0141-Hi-C-all_reads -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  718,427,931
 Normal Paired: 350,851,801 (48.84%)
 Chimeric Paired: 117,593,278 (16.37%)
 Chimeric Ambiguous: 162,637,674 (22.64%)
 Unmapped: 87,345,178 (12.16%)
 Ligation Motif Present: 420,132,636 (58.48%)
Alignable (Normal+Chimeric Paired): 468,445,079 (65.20%)
Unique Reads: 374,429,213 (52.12%)
PCR Duplicates: 91,770,083 (12.77%)
Optical Duplicates: 2,245,783 (0.31%)
Library Complexity Estimate: 1,023,049,022
Intra-fragment Reads: 9,401,729 (1.31% / 2.51%)
Below MAPQ Threshold: 141,927,258 (19.76% / 37.90%)
Hi-C Contacts: 223,100,226 (31.05% / 59.58%)
 Ligation Motif Present: 97,972,475  (13.64% / 26.17%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 28,140,559  (3.92% / 7.52%)
Intra-chromosomal: 194,959,667  (27.14% / 52.07%)
Short Range (<20Kb): 119,950,416  (16.70% / 32.04%)
Long Range (>20Kb): 75,009,189  (10.44% / 20.03%)