Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2118-PSS0141-Hi-C-all_reads -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2118-PSS0141-Hi-C-all_reads -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  718,427,931
 Normal Paired: 350,851,801 (48.84%)
 Chimeric Paired: 117,593,278 (16.37%)
 Chimeric Ambiguous: 162,637,674 (22.64%)
 Unmapped: 87,345,178 (12.16%)
 Ligation Motif Present: 420,132,636 (58.48%)
Alignable (Normal+Chimeric Paired): 468,445,079 (65.20%)
Unique Reads: 374,429,213 (52.12%)
PCR Duplicates: 91,770,083 (12.77%)
Optical Duplicates: 2,245,783 (0.31%)
Library Complexity Estimate: 1,023,049,022
Intra-fragment Reads: 9,401,729 (1.31% / 2.51%)
Below MAPQ Threshold: 90,612,213 (12.61% / 24.20%)
Hi-C Contacts: 274,415,271 (38.20% / 73.29%)
 Ligation Motif Present: 111,042,555  (15.46% / 29.66%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 41,029,912  (5.71% / 10.96%)
Intra-chromosomal: 233,385,359  (32.49% / 62.33%)
Short Range (<20Kb): 138,407,868  (19.27% / 36.97%)
Long Range (>20Kb): 94,977,409  (13.22% / 25.37%)