Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-05-29-NextSeq-run/juicer-L2117-PSS0141-Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-05-29-NextSeq-run/juicer-L2117-PSS0141-Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  103,493,938
 Normal Paired: 87,563,997 (84.61%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 15,929,941 (15.39%)
 Ligation Motif Present: 770,321 (0.74%)
Alignable (Normal+Chimeric Paired): 87,563,997 (84.61%)
Unique Reads: 81,673,727 (78.92%)
PCR Duplicates: 5,838,756 (5.64%)
Optical Duplicates: 51,514 (0.05%)
Library Complexity Estimate: 626,320,315
Intra-fragment Reads: 6,734,980 (6.51% / 8.25%)
Below MAPQ Threshold: 46,328,425 (44.76% / 56.72%)
Hi-C Contacts: 28,610,322 (27.64% / 35.03%)
 Ligation Motif Present: 82,802  (0.08% / 0.10%)
 3' Bias (Long Range): 54% - 46%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 903,244  (0.87% / 1.11%)
Intra-chromosomal: 27,707,078  (26.77% / 33.92%)
Short Range (<20Kb): 26,436,966  (25.54% / 32.37%)
Long Range (>20Kb): 1,270,108  (1.23% / 1.56%)