Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-05-29-NextSeq-run/juicer-L2117-PSS0141-Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-05-29-NextSeq-run/juicer-L2117-PSS0141-Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  103,493,938
 Normal Paired: 87,563,997 (84.61%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 15,929,941 (15.39%)
 Ligation Motif Present: 770,321 (0.74%)
Alignable (Normal+Chimeric Paired): 87,563,997 (84.61%)
Unique Reads: 81,673,727 (78.92%)
PCR Duplicates: 5,838,756 (5.64%)
Optical Duplicates: 51,514 (0.05%)
Library Complexity Estimate: 626,320,315
Intra-fragment Reads: 6,734,980 (6.51% / 8.25%)
Below MAPQ Threshold: 37,171,833 (35.92% / 45.51%)
Hi-C Contacts: 37,766,914 (36.49% / 46.24%)
 Ligation Motif Present: 110,982  (0.11% / 0.14%)
 3' Bias (Long Range): 58% - 42%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,092,452  (2.99% / 3.79%)
Intra-chromosomal: 34,674,462  (33.50% / 42.45%)
Short Range (<20Kb): 32,830,677  (31.72% / 40.20%)
Long Range (>20Kb): 1,843,764  (1.78% / 2.26%)