Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2117-PSS0141-Hi-C-all_reads -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2117-PSS0141-Hi-C-all_reads -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  663,714,355
 Normal Paired: 589,993,052 (88.89%)
 Chimeric Paired: 36,936,395 (5.57%)
 Chimeric Ambiguous: 19,045,633 (2.87%)
 Unmapped: 17,739,275 (2.67%)
 Ligation Motif Present: 15,753,128 (2.37%)
Alignable (Normal+Chimeric Paired): 626,929,447 (94.46%)
Unique Reads: 407,856,419 (61.45%)
PCR Duplicates: 215,178,433 (32.42%)
Optical Duplicates: 3,894,595 (0.59%)
Library Complexity Estimate: 679,458,710
Intra-fragment Reads: 43,695,270 (6.58% / 10.71%)
Below MAPQ Threshold: 117,055,733 (17.64% / 28.70%)
Hi-C Contacts: 247,105,416 (37.23% / 60.59%)
 Ligation Motif Present: 4,421,106  (0.67% / 1.08%)
 3' Bias (Long Range): 52% - 48%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 24,235,364  (3.65% / 5.94%)
Intra-chromosomal: 222,870,052  (33.58% / 54.64%)
Short Range (<20Kb): 214,767,210  (32.36% / 52.66%)
Long Range (>20Kb): 8,102,818  (1.22% / 1.99%)