Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2117-PSS0141-Hi-C-all_reads -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2117-PSS0141-Hi-C-all_reads -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  663,714,355
 Normal Paired: 589,993,052 (88.89%)
 Chimeric Paired: 36,936,395 (5.57%)
 Chimeric Ambiguous: 19,045,633 (2.87%)
 Unmapped: 17,739,275 (2.67%)
 Ligation Motif Present: 15,753,128 (2.37%)
Alignable (Normal+Chimeric Paired): 626,929,447 (94.46%)
Unique Reads: 407,856,419 (61.45%)
PCR Duplicates: 215,178,433 (32.42%)
Optical Duplicates: 3,894,595 (0.59%)
Library Complexity Estimate: 679,458,710
Intra-fragment Reads: 43,695,270 (6.58% / 10.71%)
Below MAPQ Threshold: 72,062,302 (10.86% / 17.67%)
Hi-C Contacts: 292,098,847 (44.01% / 71.62%)
 Ligation Motif Present: 4,877,650  (0.73% / 1.20%)
 3' Bias (Long Range): 55% - 45%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 40,829,847  (6.15% / 10.01%)
Intra-chromosomal: 251,269,000  (37.86% / 61.61%)
Short Range (<20Kb): 240,795,692  (36.28% / 59.04%)
Long Range (>20Kb): 10,473,210  (1.58% / 2.57%)