Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-03-20-NextSeq/juicer-L2062-PSS085_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-03-20-NextSeq/juicer-L2062-PSS085_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  232,432,554
 Normal Paired: 185,710,253 (79.90%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 46,722,301 (20.10%)
 Ligation Motif Present: 28,129,237 (12.10%)
Alignable (Normal+Chimeric Paired): 185,710,253 (79.90%)
Unique Reads: 162,482,842 (69.91%)
PCR Duplicates: 23,010,911 (9.90%)
Optical Duplicates: 216,500 (0.09%)
Library Complexity Estimate: 684,441,936
Intra-fragment Reads: 17,106,883 (7.36% / 10.53%)
Below MAPQ Threshold: 73,584,364 (31.66% / 45.29%)
Hi-C Contacts: 71,791,595 (30.89% / 44.18%)
 Ligation Motif Present: 2,808,839  (1.21% / 1.73%)
 3' Bias (Long Range): 73% - 27%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 8,787,925  (3.78% / 5.41%)
Intra-chromosomal: 63,003,670  (27.11% / 38.78%)
Short Range (<20Kb): 38,643,757  (16.63% / 23.78%)
Long Range (>20Kb): 24,359,590  (10.48% / 14.99%)