Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2062-PSS085_Hi-C-all_reads -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2062-PSS085_Hi-C-all_reads -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  324,785,132
 Normal Paired: 245,404,119 (75.56%)
 Chimeric Paired: 20,487,963 (6.31%)
 Chimeric Ambiguous: 11,894,812 (3.66%)
 Unmapped: 46,998,238 (14.47%)
 Ligation Motif Present: 63,071,068 (19.42%)
Alignable (Normal+Chimeric Paired): 265,892,082 (81.87%)
Unique Reads: 210,725,424 (64.88%)
PCR Duplicates: 54,300,049 (16.72%)
Optical Duplicates: 866,609 (0.27%)
Library Complexity Estimate: 555,021,506
Intra-fragment Reads: 22,849,927 (7.04% / 10.84%)
Below MAPQ Threshold: 81,443,530 (25.08% / 38.65%)
Hi-C Contacts: 106,431,967 (32.77% / 50.51%)
 Ligation Motif Present: 13,420,004  (4.13% / 6.37%)
 3' Bias (Long Range): 70% - 30%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 12,011,899  (3.70% / 5.70%)
Intra-chromosomal: 94,420,068  (29.07% / 44.81%)
Short Range (<20Kb): 62,408,570  (19.22% / 29.62%)
Long Range (>20Kb): 32,011,088  (9.86% / 15.19%)