#!/bin/bash
#SBATCH --job-name=zJ1990-1
#SBATCH --output=zJ1990.1.out
#SBATCH --error=zJ1990.1.err
#SBATCH --time=160:00:00
#SBATCH -p akundaje,sfgf
#SBATCH --cpus-per-task=16
#SBATCH --mem=100000
export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.17; module load java; module load system; module load parallel/20180122; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-02-10-NextSeq/juicer-L1990-SSB01_symbiotic-Aiptasia_pallida-1.1 -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-02-10-NextSeq/juicer-L1990-SSB01_symbiotic-Aiptasia_pallida-1.1 -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/GCA_001417965.1_Aiptasia_genome_1.1_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/Aiptasia_pallida-1.1_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa